Literature DB >> 18227116

TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers.

B Slabbinck1, P Dawyndt, M Martens, P De Vos, B De Baets.   

Abstract

UNLABELLED: Selection of optimal biomarkers for the identification of different operational taxonomic units (OTUs) may be a hard and tedious task, especially when phylogenetic trees for multiple genes need to be compared. With TaxonGap we present a novel and easy-to-handle software tool that allows visual comparison of the discriminative power of multiple biomarkers for a set of OTUs. The compact graphical output allows for easy comparison and selection of individual biomarkers. AVAILABILITY: Graphical User Interface; Executable JAVA archive file, source code, supplementary information and sample files can be downloaded from the website: http://www.kermit.ugent.be/taxongap

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Year:  2008        PMID： 18227116     DOI： 10.1093/bioinformatics/btn031

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  13 in total

1.  From learning taxonomies to phylogenetic learning: integration of 16S rRNA gene data into FAME-based bacterial classification.

Authors:  Bram Slabbinck; Willem Waegeman; Peter Dawyndt; Paul De Vos; Bernard De Baets
Journal:  BMC Bioinformatics       Date:  2010-01-30       Impact factor: 3.169

2.  Species identification of Rhododendron (Ericaceae) using the chloroplast deoxyribonucleic acid PsbA-trnH genetic marker.

Authors:  Yimei Liu; Lehua Zhang; Zhen Liu; Kun Luo; Shilin Chen; Keli Chen
Journal:  Pharmacogn Mag       Date:  2012-01       Impact factor: 1.085

3.  Application of deoxyribonucleic acid barcoding in Lauraceae plants.

Authors:  Zhen Liu; Shi-Lin Chen; Jing-Yuan Song; Shou-Jun Zhang; Ke-Li Chen
Journal:  Pharmacogn Mag       Date:  2012-01       Impact factor: 1.085

4.  Identification of medical plants of 24 Ardisia species from China using the matK genetic marker.

Authors:  Yimei Liu; Ke Wang; Zhen Liu; Kun Luo; Shilin Chen; Keli Chen
Journal:  Pharmacogn Mag       Date:  2013-10       Impact factor: 1.085

5.  Molecular Identification of Dendrobium Species (Orchidaceae) Based on the DNA Barcode ITS2 Region and Its Application for Phylogenetic Study.

Authors:  Shangguo Feng; Yan Jiang; Shang Wang; Mengying Jiang; Zhe Chen; Qicai Ying; Huizhong Wang
Journal:  Int J Mol Sci       Date:  2015-09-11       Impact factor: 5.923

6.  Application of the Ribosomal DNA ITS2 Region of Physalis (Solanaceae): DNA Barcoding and Phylogenetic Study.

Authors:  Shangguo Feng; Mengying Jiang; Yujun Shi; Kaili Jiao; Chenjia Shen; Jiangjie Lu; Qicai Ying; Huizhong Wang
Journal:  Front Plant Sci       Date:  2016-07-19       Impact factor: 5.753

7.  Barcode ITS2: a useful tool for identifying Trachelospermum jasminoides and a good monitor for medicine market.

Authors:  Ning Yu; Yu-Long Wei; Xin Zhang; Ning Zhu; Yan-Li Wang; Yue Zhu; Hai-Ping Zhang; Fen-Mei Li; Lan Yang; Jia-Qi Sun; Ai-Dong Sun
Journal:  Sci Rep       Date:  2017-07-11       Impact factor: 4.379

8.  DNA Barcoding Mushroom Spawn Using EF-1α Barcodes: A Case Study in Oyster Mushrooms (Pleurotus).

Authors:  Peng Zhao; Sen-Peng Ji; Xian-Hao Cheng; Tolgor Bau; Hong-Xin Dong; Xing-Xi Gao
Journal:  Front Microbiol       Date:  2021-05-17       Impact factor: 5.640

9.  SSR marker development and intraspecific genetic divergence exploration of Chrysanthemum indicum based on transcriptome analysis.

Authors:  Zhengzhou Han; Xinye Ma; Min Wei; Tong Zhao; Ruoting Zhan; Weiwen Chen
Journal:  BMC Genomics       Date:  2018-04-25       Impact factor: 3.969

10.  Suitable DNA Barcoding for Identification and Supervision of Piper kadsura in Chinese Medicine Markets.

Authors:  Ning Yu; Hong Gu; Yulong Wei; Ning Zhu; Yanli Wang; Haiping Zhang; Yue Zhu; Xin Zhang; Chao Ma; Aidong Sun
Journal:  Molecules       Date:  2016-09-12       Impact factor: 4.411
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