Literature DB >> 18227072

The Caenorhabditis elegans K10C2.4 gene encodes a member of the fumarylacetoacetate hydrolase family: a Caenorhabditis elegans model of type I tyrosinemia.

Alfred L Fisher1, Kathryn E Page, Gordon J Lithgow, Lindsey Nash.   

Abstract

In eukaryotes and many bacteria, tyrosine is degraded to produce energy via a five-step tyrosine degradation pathway. Mutations affecting the tyrosine degradation pathway are also of medical importance as mutations affecting enzymes in the pathway are responsible for type I, type II, and type III tyrosinemia. The most severe of these is type I tyrosinemia, which is caused by mutations affecting the last enzyme in the pathway, fumarylacetoacetate hydrolase (FAH). So far, tyrosine degradation in the nematode Caenorhabditis elegans has not been studied; however, genes predicted to encode enzymes in this pathway have been identified in several microarray, proteomic, and RNA interference (RNAi) screens as perhaps being involved in aging and the control of protein folding. We sought to identify and characterize the genes in the worm tyrosine degradation pathway as an initial step in understanding these findings. Here we describe the characterization of the K10C2.4, which encodes a homolog of FAH. RNAi directed against K10C2.4 produces a lethal phenotype consisting of death in young adulthood, extensive damage to the intestine, impaired fertility, and activation of oxidative stress and endoplasmic stress response pathways. This phenotype is due to alterations in tyrosine metabolism as increases in dietary tyrosine enhance it, and inhibition of upstream enzymes in tyrosine degradation with RNAi or genetic mutations reduces the phenotype. We also use our model to identify genes that suppress the damage produced by K10C2.4 RNAi in a pilot genetic screen. Our results establish worms as a model for the study of type I tyrosinemia.

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Year:  2008        PMID: 18227072      PMCID: PMC2431024          DOI: 10.1074/jbc.M708341200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  53 in total

1.  The nuclear hormone receptor DAF-12 has opposing effects on Caenorhabditis elegans lifespan and regulates genes repressed in multiple long-lived worms.

Authors:  Alfred L Fisher; Gordon J Lithgow
Journal:  Aging Cell       Date:  2006-04       Impact factor: 9.304

2.  PANTHER: a library of protein families and subfamilies indexed by function.

Authors:  Paul D Thomas; Michael J Campbell; Anish Kejariwal; Huaiyu Mi; Brian Karlak; Robin Daverman; Karen Diemer; Anushya Muruganujan; Apurva Narechania
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

3.  Shared transcriptional signature in Caenorhabditis elegans Dauer larvae and long-lived daf-2 mutants implicates detoxification system in longevity assurance.

Authors:  Joshua J McElwee; Eugene Schuster; Eric Blanc; James H Thomas; David Gems
Journal:  J Biol Chem       Date:  2004-08-11       Impact factor: 5.157

Review 4.  Gene expression profiling of cells, tissues, and developmental stages of the nematode C. elegans.

Authors:  S J McKay; R Johnsen; J Khattra; J Asano; D L Baillie; S Chan; N Dube; L Fang; B Goszczynski; E Ha; E Halfnight; R Hollebakken; P Huang; K Hung; V Jensen; S J M Jones; H Kai; D Li; A Mah; M Marra; J McGhee; R Newbury; A Pouzyrev; D L Riddle; E Sonnhammer; H Tian; D Tu; J R Tyson; G Vatcher; A Warner; K Wong; Z Zhao; D G Moerman
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2003

5.  Tyrosinemia with plantar and palmar keratosis and keratitis.

Authors:  L A Goldsmith; E Kang; D C Bienfang; K Jimbow; P Gerald; H P Baden
Journal:  J Pediatr       Date:  1973-11       Impact factor: 4.406

6.  Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library.

Authors:  Jean-François Rual; Julian Ceron; John Koreth; Tong Hao; Anne-Sophie Nicot; Tomoko Hirozane-Kishikawa; Jean Vandenhaute; Stuart H Orkin; David E Hill; Sander van den Heuvel; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

7.  Genome-wide RNA interference screen identifies previously undescribed regulators of polyglutamine aggregation.

Authors:  Ellen A A Nollen; Susana M Garcia; Gijs van Haaften; Soojin Kim; Alejandro Chavez; Richard I Morimoto; Ronald H A Plasterk
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-14       Impact factor: 11.205

8.  SKN-1 links C. elegans mesendodermal specification to a conserved oxidative stress response.

Authors:  Jae Hyung An; T Keith Blackwell
Journal:  Genes Dev       Date:  2003-07-17       Impact factor: 11.361

9.  Four-hydroxyphenylpyruvic acid oxidase deficiency with normal fumarylacetoacetase: a new variant form of hereditary hypertyrosinemia.

Authors:  F Endo; A Kitano; I Uehara; N Nagata; I Matsuda; T Shinka; T Kuhara; I Matsumoto
Journal:  Pediatr Res       Date:  1983-02       Impact factor: 3.756

10.  On the enzymic defects in hereditary tyrosinemia.

Authors:  B Lindblad; S Lindstedt; G Steen
Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205

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  21 in total

1.  skn-1-Dependent and -independent regulation of aip-1 expression following metabolic stress in Caenorhabditis elegans.

Authors:  Annabel A Ferguson; Mitchell G Springer; Alfred L Fisher
Journal:  Mol Cell Biol       Date:  2010-03-29       Impact factor: 4.272

Review 2.  Relationship of electrophilic stress to aging.

Authors:  Piotr Zimniak
Journal:  Free Radic Biol Med       Date:  2011-06-12       Impact factor: 7.376

3.  The production of C. elegans transgenes via recombineering with the galK selectable marker.

Authors:  Yue Zhang; Luv Kashyap; Annabel A Ferguson; Alfred L Fisher
Journal:  J Vis Exp       Date:  2011-01-11       Impact factor: 1.355

4.  Disruption of fumarylacetoacetate hydrolase causes spontaneous cell death under short-day conditions in Arabidopsis.

Authors:  Chengyun Han; Chunmei Ren; Tiantian Zhi; Zhou Zhou; Yan Liu; Feng Chen; Wen Peng; Daoxin Xie
Journal:  Plant Physiol       Date:  2013-06-06       Impact factor: 8.340

5.  The garlic constituent diallyl trisulfide increases the lifespan of C. elegans via skn-1 activation.

Authors:  Anna A Powolny; Shivendra V Singh; Simon Melov; Alan Hubbard; Alfred L Fisher
Journal:  Exp Gerontol       Date:  2011-02-02       Impact factor: 4.032

6.  A metabolic signature of long life in Caenorhabditis elegans.

Authors:  Silke Fuchs; Jacob G Bundy; Sarah K Davies; Jonathan M Viney; Jonathan S Swire; Armand M Leroi
Journal:  BMC Biol       Date:  2010-02-10       Impact factor: 7.431

7.  RNAi screening implicates a SKN-1-dependent transcriptional response in stress resistance and longevity deriving from translation inhibition.

Authors:  Jinling Wang; Stacey Robida-Stubbs; Jennifer M A Tullet; Jean-François Rual; Marc Vidal; T Keith Blackwell
Journal:  PLoS Genet       Date:  2010-08-05       Impact factor: 5.917

8.  Sugar suppresses cell death caused by disruption of fumarylacetoacetate hydrolase in Arabidopsis.

Authors:  Tiantian Zhi; Zhou Zhou; Yi Huang; Chengyun Han; Yan Liu; Qi Zhu; Chunmei Ren
Journal:  Planta       Date:  2016-04-20       Impact factor: 4.116

9.  Improved vectors for selection of transgenic Caenorhabditis elegans.

Authors:  Annabel A Ferguson; Liquan Cai; Luv Kashyap; Alfred L Fisher
Journal:  Methods Mol Biol       Date:  2013

10.  Retrofitting ampicillin resistant vectors by recombination for use in generating C. elegans transgenic animals by bombardment.

Authors:  Annabel A Ferguson; Alfred L Fisher
Journal:  Plasmid       Date:  2009-06-09       Impact factor: 3.466

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