Literature DB >> 18222485

Stoichiometric analysis of self-maintaining metabolisms.

Francisco Montero1, Juan Carlos Nuño, Enrique Meléndez-Hevia, Felix Olasagasti, Sara Vázquez, Federico Morán.   

Abstract

This paper presents an extension of stoichiometric analysis in systems where the catalytic compounds (enzymes) are also intermediates of the metabolic network (dual property), so they are produced and degraded by the reaction network itself. To take this property into account, we introduce the definition of enzyme-maintaining mode, a set of reactions that produces its own catalyst and can operate at stationary state. Moreover, an enzyme-maintaining mode is defined as elementary with respect to a given reaction if the removal of any of the remaining reactions causes the cessation of any steady state flux through this reference reaction. These concepts are applied to determine the network structure of a simple self-maintaining system.

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Year:  2007        PMID: 18222485     DOI: 10.1016/j.jtbi.2007.11.025

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  3 in total

1.  A simple self-maintaining metabolic system: robustness, autocatalysis, bistability.

Authors:  Gabriel Piedrafita; Francisco Montero; Federico Morán; María Luz Cárdenas; Athel Cornish-Bowden
Journal:  PLoS Comput Biol       Date:  2010-08-05       Impact factor: 4.475

2.  Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti.

Authors:  Miguel Ponce-de-León; Francisco Montero; Juli Peretó
Journal:  BMC Syst Biol       Date:  2013-10-31

3.  On the definition of a self-sustaining chemical reaction system and its role in heredity.

Authors:  Yu Liu
Journal:  Biol Direct       Date:  2020-10-06       Impact factor: 4.540

  3 in total

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