Literature DB >> 18220380

Monte Carlo structure simulations for aqueous 1,4-dioxane solutions.

Peter I Nagy1, Gergely Völgyi, Krisztina Takács-Novák.   

Abstract

Monte Carlo simulations in the NpT ensembles have been performed for the structure exploration of aqueous 1,4-dioxane solutions. Three different systems with all-atom dioxane:TIP4P water molar compositions of 2:500 (code:D2), 8:465 (D8), and 17:425 (D17) modeled solutions of 0.22, 0.88, and 1.86 mol/dm3 concentrations, respectively, at T = 298 K and p = 1 atm. The calculated solution densities increase from 0.992 to 1.002 g/cm3 with increasing dioxane concentration and approach the experimentally determined densities within 1%. This close agreement was achieved by utilizing RESP charges fitted to the in-solution IEF-PCM/B3LYP/6-31G* electrostatic potential of dioxane taken in its chair conformation and recently developed C, H steric parameters for ethers for calculations with a 12-6-1 all-atom potential. Solution structure analyses pointed out that the dioxane molecules arrange in the solutions with favorable distances of 4-8 angstroms for the ring symmetry centers. Within this range not only pairs of rings but triangular triads and tetrads have also been observed with center-center distances <8 angstroms. For the D8 system, about 25% of the sampled configurations included such a triad. In the case of the D17 model, two simulations starting from different solution configuration predicted different degrees for the dioxane aggregation in aqueous solution. In the more aggregated structure 3-21 triads are consistently maintained and 1-2 tetrads are formed in 58% of the configurations. Each dioxane oxygen forms about one hydrogen bond, on average, to a water molecule in the 0.22-1.86 molar range. The most likely O(dioxane)...H(water) hydrogen bond distance is 1.75-1.80 angstroms compared to the optimal distance of 1.72 angstroms in the isolated dimer. The optimal dioxane-water interaction energy of -5.65 kcal/mol indicates a remarkable hydrogen-bond acceptor character for dioxane.

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Year:  2008        PMID: 18220380     DOI: 10.1021/jp075603c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

1.  Theoretical and experimental studies of the isomeric protonation in solution for a prototype aliphatic ring containing two nitrogens.

Authors:  Peter I Nagy; Aditya Maheshwari; Yong-Wah Kim; William S Messer
Journal:  J Phys Chem B       Date:  2010-01-14       Impact factor: 2.991

2.  Theoretical studies of the in-solution isomeric protonation of non-aromatic six-member rings with two nitrogens.

Authors:  Peter I Nagy; William S Messer
Journal:  J Phys Chem B       Date:  2011-03-31       Impact factor: 2.991

3.  Using Molecular Simulation to Guide Protein Engineering for Biocatalysis in Organic Solvents.

Authors:  Haiyang Cui; Markus Vedder; Ulrich Schwaneberg; Mehdi D Davari
Journal:  Methods Mol Biol       Date:  2022

4.  Optimization in solvent selection for chlorin e6 in photodynamic therapy.

Authors:  Shubhajit Paul; Paul Wan Sia Heng; Lai Wah Chan
Journal:  J Fluoresc       Date:  2012-11-15       Impact factor: 2.217

  4 in total

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