Literature DB >> 18219595

PCR-SSCP: a method for the molecular analysis of genetic diseases.

V Konstantinos Kakavas1, Kakavas V Konstantinos, Panagiotis Plageras, Plageras Panagiotis, T Antonios Vlachos, Vlachos T Antonios, Agelos Papaioannou, Papaioannou Agelos, V Argiris Noulas, Noulas V Argiris.   

Abstract

Single strand conformation polymorphism (SSCP) is a reproducible, rapid and quite simple method for the detection of deletions/insertions/rearrangements in polymerase chain reaction amplified DNA. All the details for the use of PCR-SSCP are presented in the direction of genetic diseases (beta-thalassaemia, cystic fibrosis), optimum gel conditions, sensitivity and the latest modifications of the method, which are applied in most laboratories. This non-radioactive PCR-SSCP method can be reliably used to identify mutations in patients (beta-globin, CFTR), provided suitable controls are available. Moreover, it is widely used for mutation identification in carriers (beta-thalassaemia, cystic fibrosis), making it particularly useful in population screening.

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Year:  2007        PMID: 18219595     DOI: 10.1007/s12033-007-9006-7

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  75 in total

1.  An integrated method for mutation detection using on-chip sample preparation, single-stranded conformation polymorphism, and heteroduplex analysis.

Authors:  Golnaz Vahedi; Karan Kaler; Christopher J Backhouse
Journal:  Electrophoresis       Date:  2004-07       Impact factor: 3.535

2.  Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction.

Authors:  M Orita; Y Suzuki; T Sekiya; K Hayashi
Journal:  Genomics       Date:  1989-11       Impact factor: 5.736

3.  Silver staining of proteins and DNA.

Authors:  C R Merril
Journal:  Nature       Date:  1990-02-22       Impact factor: 49.962

4.  A three-base-pair deletion in the peripherin-RDS gene in one form of retinitis pigmentosa.

Authors:  G J Farrar; P Kenna; S A Jordan; R Kumar-Singh; M M Humphries; E M Sharp; D M Sheils; P Humphries
Journal:  Nature       Date:  1991-12-12       Impact factor: 49.962

Review 5.  The human genome project: past, present, and future.

Authors:  J D Watson
Journal:  Science       Date:  1990-04-06       Impact factor: 47.728

6.  Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS).

Authors:  C R Newton; A Graham; L E Heptinstall; S J Powell; C Summers; N Kalsheker; J C Smith; A F Markham
Journal:  Nucleic Acids Res       Date:  1989-04-11       Impact factor: 16.971

7.  Deletions and a translocation interrupt a cloned gene at the neurofibromatosis type 1 locus.

Authors:  D Viskochil; A M Buchberg; G Xu; R M Cawthon; J Stevens; R K Wolff; M Culver; J C Carey; N G Copeland; N A Jenkins
Journal:  Cell       Date:  1990-07-13       Impact factor: 41.582

8.  Genetic studies in variegate porphyria in Spain. Identification of gene mutations and family study for carrier detection.

Authors:  M Lecha; C Badenas; S Puig; J Orfila; M Milà; J To-Figueras; C Muñoz; P Mercader; C Herrero
Journal:  J Eur Acad Dermatol Venereol       Date:  2006-09       Impact factor: 6.166

9.  Conditions for single strand conformation polymorphism (SSCP)analysis with broad applicability: a study on the effects of acrylamide, buffer and glycerol concentrations in SSCP analysis of exons of the p53 gene).

Authors:  W Teschauer; T Mussack; A Braun; H Waldner; E Fink
Journal:  Eur J Clin Chem Clin Biochem       Date:  1996-02

10.  Molecular epidemiological investigation of Ascaris genotypes in China based on single-strand conformation polymorphism analysis of ribosomal DNA.

Authors:  Weidong Peng; Keng Yuan; Xianmin Zhou; Min Hu; Youssef G Abs EL-Osta; Robin B Gasser
Journal:  Electrophoresis       Date:  2003-07       Impact factor: 3.535

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  12 in total

1.  Effective screen of CRISPR/Cas9-induced mutants in rice by single-strand conformation polymorphism.

Authors:  Xuelian Zheng; Shixin Yang; Dengwei Zhang; Zhaohui Zhong; Xu Tang; Kejun Deng; Jianping Zhou; Yiping Qi; Yong Zhang
Journal:  Plant Cell Rep       Date:  2016-03-23       Impact factor: 4.570

2.  Genotype analysis of collagenase gene by PCR-SSCP in Vibrio alginolyticus and its association with virulence to marine fish.

Authors:  Lu Yishan; Feng Jiaming; Wu Zaohe; Jian Jichang
Journal:  Curr Microbiol       Date:  2011-03-12       Impact factor: 2.188

3.  Glycogen Storage Disease Type Ia Screening Using Dried Blood Spots on Filter Paper: Application of COP-PCR for Detection of the c.648G>T G6PC Gene Mutation.

Authors:  Yogik Onky Silvana Wijaya; Emma Tabe Eko Niba; Ryo Yabushita; Yoshihiro Bouike; Hisahide Nishio; Hiroyuki Awano
Journal:  Kobe J Med Sci       Date:  2021-11-02

4.  Development of allele-specific PCR methodology (AS-PCR) to screening A. lumbricoides and A. suum.

Authors:  Talita Rodrigues Dos Santos; Luis Fernando Viana Furtado; Andreina de Carvalho Araujo; Celi da Silva Medeiros; Pedro Henrique Vieira Germano; Valéria Nayara Gomes Mendes de Oliveira; Elida Mara Leite Rabelo
Journal:  Parasitol Res       Date:  2022-06-17       Impact factor: 2.383

5.  Is single-strand conformation polymorphism analysis of the full 5' untranslated region an adequate approach to study hepatitis C virus quasispecies distribution?

Authors:  Jorge Vera-Otarola; María Inés Barría; Ursula León; Pilar Carvallo; Alejandro Soza; Marcelo López-Lastra
Journal:  J Virol       Date:  2009-06-24       Impact factor: 5.103

6.  Development of low-density oligonucleotide microarrays for detecting mutations causing Wilson's disease.

Authors:  Manjula Mathur; Ekta Singh; T B Poduval; Akkipeddi V S S N Rao
Journal:  Indian J Med Res       Date:  2015-02       Impact factor: 2.375

7.  Separation of 1-23-kb complementary DNA strands by urea-agarose gel electrophoresis.

Authors:  Eva Hegedüs; Endre Kókai; Alexander Kotlyar; Viktor Dombrádi; Gábor Szabó
Journal:  Nucleic Acids Res       Date:  2009-06-23       Impact factor: 16.971

Review 8.  An overview of mutation detection methods in genetic disorders.

Authors:  Nejat Mahdieh; Bahareh Rabbani
Journal:  Iran J Pediatr       Date:  2013-08       Impact factor: 0.364

9.  Detection of three closely located single nucleotide polymorphisms in the EAAT2 promoter: comparison of single-strand conformational polymorphism (SSCP), pyrosequencing and Sanger sequencing.

Authors:  Shavanthi Rajatileka; Karen Luyt; Maggie Williams; David Harding; David Odd; Elek Molnár; Anikó Váradi
Journal:  BMC Genet       Date:  2014-07-05       Impact factor: 2.797

10.  MALDI-TOF-MS based identification and molecular characterization of food associated methicillin-resistant Staphylococcus aureus.

Authors:  H M Manukumar; S Umesha
Journal:  Sci Rep       Date:  2017-09-12       Impact factor: 4.379

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