Literature DB >> 18215642

Genetic organization of nylon-oligomer-degrading enzymes from alkalophilic bacterium, Agromyces sp. KY5R.

Kengo Yasuhira1, Yuki Uedo, Masahiro Takeo, Dai-ichiro Kato, Seiji Negoro.   

Abstract

A 15-kb gene locus including nylon-oligomer-degrading genes from the chromosome of an alkalophilic bacterium, Agromyces sp. KY5R, was cloned and sequenced. The genetic organization was similar to the DNA region flanked by directly repeated IS6100 sequences on the nylon-oligomer-degradative plasmid pOAD2. However, we found several genetic rearrangements between the two DNA regions. Here, we discuss the possible mechanisms underlying the genetic rearrangements.

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Year:  2007        PMID： 18215642     DOI： 10.1263/jbb.104.521

Source DB:  PubMed          Journal:  J Biosci Bioeng        ISSN： 1347-4421            Impact factor:   2.894


  9 in total

1.  Three-dimensional structure of nylon hydrolase and mechanism of nylon-6 hydrolysis.

Authors:  Seiji Negoro; Naoki Shibata; Yusuke Tanaka; Kengo Yasuhira; Hiroshi Shibata; Haruka Hashimoto; Young-Ho Lee; Shohei Oshima; Ryuji Santa; Shohei Oshima; Kozo Mochiji; Yuji Goto; Takahisa Ikegami; Keisuke Nagai; Dai-Ichiro Kato; Masahiro Takeo; Yoshiki Higuchi
Journal:  J Biol Chem       Date:  2011-12-19       Impact factor: 5.157

2.  Crystallization and X-ray diffraction analysis of nylon-oligomer hydrolase (NylC) from Agromyces sp. KY5R.

Authors:  Kengo Yasuhira; Naoki Shibata; Yasuhito Tanaka; Naoya Kumagai; Yusuke Tanaka; Keisuke Nagai; Dai-ichiro Kato; Masahiro Takeo; Seiji Negoro; Yoshiki Higuchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-07-19

3.  X-ray crystallographic analysis of the 6-aminohexanoate cyclic dimer hydrolase: catalytic mechanism and evolution of an enzyme responsible for nylon-6 byproduct degradation.

Authors:  Kengo Yasuhira; Naoki Shibata; Go Mongami; Yuki Uedo; Yu Atsumi; Yasuyuki Kawashima; Atsushi Hibino; Yusuke Tanaka; Young-Ho Lee; Dai-ichiro Kato; Masahiro Takeo; Yoshiki Higuchi; Seiji Negoro
Journal:  J Biol Chem       Date:  2009-11-03       Impact factor: 5.157

4.  Crystallization and X-ray diffraction analysis of nylon hydrolase (NylC) from Arthrobacter sp. KI72.

Authors:  Keisuke Nagai; Kengo Yasuhira; Yusuke Tanaka; Dai-ichiro Kato; Masahiro Takeo; Yoshiki Higuchi; Seiji Negoro; Naoki Shibata
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-28

5.  Insights into Ongoing Evolution of the Hexachlorocyclohexane Catabolic Pathway from Comparative Genomics of Ten Sphingomonadaceae Strains.

Authors:  Stephen L Pearce; John G Oakeshott; Gunjan Pandey
Journal:  G3 (Bethesda)       Date:  2015-04-07       Impact factor: 3.154

6.  Draft Genome Sequence of the Nylon Oligomer-Degrading Bacterium Arthrobacter sp. Strain KI72.

Authors:  Ikki Takehara; Dai-Ichiro Kato; Masahiro Takeo; Seiji Negoro
Journal:  Genome Announc       Date:  2017-04-27

7.  Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase.

Authors:  Seiji Negoro; Naoki Shibata; Young-Ho Lee; Ikki Takehara; Ryo Kinugasa; Keisuke Nagai; Yusuke Tanaka; Dai-Ichiro Kato; Masahiro Takeo; Yuji Goto; Yoshiki Higuchi
Journal:  Sci Rep       Date:  2018-06-27       Impact factor: 4.379

Review 8.  Plastics and the microbiome: impacts and solutions.

Authors:  G Lear; J M Kingsbury; S Franchini; V Gambarini; S D M Maday; J A Wallbank; L Weaver; O Pantos
Journal:  Environ Microbiome       Date:  2021-01-20

9.  Isolation and genomic analysis of 11-aminoundecanoic acid-degrading bacterium Pseudomonas sp. JG-B from nylon 11 enrichment culture.

Authors:  Jocelyn Gatz-Schrupp; Peter Deckard; Benjamin Hufford; Steven Ly; Peter Tupa; Hisako Masuda
Journal:  J Genomics       Date:  2020-01-25
  9 in total

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