Literature DB >> 18213404

Metabolic flux analysis and metabolic engineering of microorganisms.

Hyun Uk Kim1, Tae Yong Kim, Sang Yup Lee.   

Abstract

Recent advances in metabolic flux analysis including genome-scale constraints-based flux analysis and its applications in metabolic engineering are reviewed. Various computational aspects of constraints-based flux analysis including genome-scale stoichiometric models, additional constraints used for the improved accuracy, and several algorithms for identifying the target genes to be manipulated are described. Also, some of the successful applications of metabolic flux analysis in metabolic engineering are reviewed. Finally, we discuss the limitations that need to be overcome to make the results of genome-scale flux analysis more realistically represent the real cell metabolism.

Mesh:

Year:  2007        PMID: 18213404     DOI: 10.1039/b712395g

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  25 in total

Review 1.  Integration of metabolic reactions and gene regulation.

Authors:  Chen-Hsiang Yeang
Journal:  Mol Biotechnol       Date:  2011-01       Impact factor: 2.695

2.  Prediction of metabolic fluxes by incorporating genomic context and flux-converging pattern analyses.

Authors:  Jong Myoung Park; Tae Yong Kim; Sang Yup Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-02       Impact factor: 11.205

Review 3.  Systems strategies for developing industrial microbial strains.

Authors:  Sang Yup Lee; Hyun Uk Kim
Journal:  Nat Biotechnol       Date:  2015-10       Impact factor: 54.908

Review 4.  Potential of metabolic engineering in bacterial nanosilver synthesis.

Authors:  Sayak Mitra; Ashmita Das; Shampa Sen; Biswanath Mahanty
Journal:  World J Microbiol Biotechnol       Date:  2018-08-23       Impact factor: 3.312

Review 5.  Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology.

Authors:  Caroline B Milne; Pan-Jun Kim; James A Eddy; Nathan D Price
Journal:  Biotechnol J       Date:  2009-12       Impact factor: 4.677

6.  Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli.

Authors:  Adam M Feist; Daniel C Zielinski; Jeffrey D Orth; Jan Schellenberger; Markus J Herrgard; Bernhard Ø Palsson
Journal:  Metab Eng       Date:  2009-10-17       Impact factor: 9.783

7.  Metabolic engineering of Pichia pastoris GS115 for enhanced pentose phosphate pathway (PPP) flux toward recombinant human interferon gamma (hIFN-γ) production.

Authors:  Ashish A Prabhu; Venkata Dasu Veeranki
Journal:  Mol Biol Rep       Date:  2018-07-17       Impact factor: 2.316

8.  Reconstruction of Litopenaeus vannamei Genome-Scale Metabolic Network Model and Nutritional Requirements Analysis of Different Shrimp Commercial Varieties.

Authors:  Chenchen Gao; Jiarui Yang; Tong Hao; Jingjing Li; Jinsheng Sun
Journal:  Front Genet       Date:  2021-05-12       Impact factor: 4.599

Review 9.  Genome-scale models of bacterial metabolism: reconstruction and applications.

Authors:  Maxime Durot; Pierre-Yves Bourguignon; Vincent Schachter
Journal:  FEMS Microbiol Rev       Date:  2008-12-03       Impact factor: 16.408

10.  Flux Design: In silico design of cell factories based on correlation of pathway fluxes to desired properties.

Authors:  Guido Melzer; Manely Eslahpazir Esfandabadi; Ezequiel Franco-Lara; Christoph Wittmann
Journal:  BMC Syst Biol       Date:  2009-12-25
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