Literature DB >> 18211546

Why plant volatile analysis needs bioinformatics--detecting signal from noise in increasingly complex profiles.

N M van Dam1, G M Poppy.   

Abstract

Plant volatile analysis may be the oldest form of what now is called plant "metabolomic" analysis. A wide array of volatile organic compounds (VOCs), such as alkanes, alcohols, isoprenoids, and esters, can be collected simultaneously from the plant headspace, either within the laboratory or in the field. Increasingly faster and more sensitive analysis techniques allow detection of an ever-growing number of compounds in decreasing concentrations. However, the myriads of data becoming available from such experiments do not automatically increase our ecological and evolutionary understanding of the roles these VOCs play in plant-insect interactions. Herbivores and parasitoids responding to changes in VOC emissions are able to perceive minute changes within a complex VOC background. Plants modified in genes involved in VOC synthesis may be valuable for the evaluation of changes in plant-animal interactions compared to tests with synthetic compounds, as they allow changes to be made within the context of a more complex profile. We argue that bioinformatics is an essential tool to integrate statistical analysis of plant VOC profiles with insect behavioural data. The implementation of statistical techniques such as multivariate analysis (MVA) and meta-analysis is of the utmost importance to interpreting changes in plant VOC mixtures. MVA focuses on differences in volatile patterns rather than in single compounds. Therefore, it more closely resembles the information processing in insects that base their behavioural decisions on differences in VOC profiles between plants. Meta-analysis of different datasets will reveal general patterns pertaining to the ecological role of VOC in plant-insect interactions. Successful implementation of bioinformatics in VOC research also includes the development of MVA that integrate time-resolved chemical and behavioural analyses, as well as databases that link plant VOCs to their effects on insects.

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Year:  2008        PMID: 18211546     DOI: 10.1055/s-2007-964961

Source DB:  PubMed          Journal:  Plant Biol (Stuttg)        ISSN: 1435-8603            Impact factor:   3.081


  20 in total

1.  Parasitoids select plants more heavily infested with their caterpillar hosts: a new approach to aid interpretation of plant headspace volatiles.

Authors:  Robbie D Girling; Alex Stewart-Jones; Julie Dherbecourt; Joanna T Staley; Denis J Wright; Guy M Poppy
Journal:  Proc Biol Sci       Date:  2011-01-26       Impact factor: 5.349

Review 2.  Tracing hidden herbivores: time-resolved non-invasive analysis of belowground volatiles by proton-transfer-reaction mass spectrometry (PTR-MS).

Authors:  Holger Danner; Devasena Samudrala; Simona M Cristescu; Nicole M Van Dam
Journal:  J Chem Ecol       Date:  2012-05-18       Impact factor: 2.626

3.  Effect of Bt genetic engineering on indirect defense in cotton via a tritrophic interaction.

Authors:  Maria Carolina Blassioli Moraes; Raul Alberto Laumann; Michely Ferreira Santos Aquino; Débora Pires Paula; Miguel Borges
Journal:  Transgenic Res       Date:  2010-06-04       Impact factor: 2.788

4.  Sex-specific volatile compounds influence microarthropod-mediated fertilization of moss.

Authors:  Todd N Rosenstiel; Erin E Shortlidge; Andrea N Melnychenko; James F Pankow; Sarah M Eppley
Journal:  Nature       Date:  2012-07-18       Impact factor: 49.962

5.  Riding on the wind: volatile compounds dictate selection of grassland seedlings by snails.

Authors:  Mick E Hanley; Roger W R Shannon; Damien G Lemoine; Bethan Sandey; Philip L Newland; Guy M Poppy
Journal:  Ann Bot       Date:  2018-11-30       Impact factor: 4.357

6.  Natural selection on floral volatile production in Penstemon digitalis: highlighting the role of linalool.

Authors:  Amy L Parachnowitsch; Rosalie C F Burdon; Robert A Raguso; André Kessler
Journal:  Plant Signal Behav       Date:  2012-12-06

7.  The impact of biochemistry vs. population membership on floral scent profiles in colour polymorphic Hesperis matronalis.

Authors:  Cassie J Majetic; Robert A Raguso; Tia-Lynn Ashman
Journal:  Ann Bot       Date:  2008-09-26       Impact factor: 4.357

8.  Strong attraction of the parasitoid Cotesia marginiventris towards minor volatile compounds of maize.

Authors:  Marco D'Alessandro; Virginie Brunner; Georg von Mérey; Ted C J Turlings
Journal:  J Chem Ecol       Date:  2009-09-25       Impact factor: 2.626

9.  Identification of biologically relevant compounds in aboveground and belowground induced volatile blends.

Authors:  Nicole M van Dam; Bao-Li Qiu; Cornelis A Hordijk; Louise E M Vet; Jeroen J Jansen
Journal:  J Chem Ecol       Date:  2010-08-25       Impact factor: 2.626

10.  Innate and Learned Prey-Searching Behavior in a Generalist Predator.

Authors:  Agnès Ardanuy; Ramon Albajes; Ted C J Turlings
Journal:  J Chem Ecol       Date:  2016-06-24       Impact factor: 2.626

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