Literature DB >> 18208376

Biomolecular simulation: historical picture and future perspectives.

Wilfred F van Gunsteren1, Jozica Dolenc.   

Abstract

Over the last 30 years, computation based on molecular models is playing an increasingly important role in biology, biological chemistry and biophysics. Since only a very limited number of properties of biomolecular systems are actually accessible to measurement by experimental means, computer simulation complements experiments by providing not only averages, but also distributions and time series of any definable, observable or non-observable, quantity. Biomolecular simulation may be used (i) to interpret experimental data, (ii) to provoke new experiments, (iii) to replace experiments and (iv) to protect intellectual property. Progress over the last 30 years is sketched and perspectives are outlined for the future.

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Year:  2008        PMID: 18208376     DOI: 10.1042/BST0360011

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  6 in total

1.  Reduced atomic pair-interaction design (RAPID) model for simulations of proteins.

Authors:  Boris Ni; Andrij Baumketner
Journal:  J Chem Phys       Date:  2013-02-14       Impact factor: 3.488

Review 2.  Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles.

Authors:  R Bryn Fenwick; Santi Esteban-Martín; Xavier Salvatella
Journal:  Eur Biophys J       Date:  2011-11-17       Impact factor: 1.733

3.  A comparison of three DFT exchange-correlation functionals and two basis sets for the prediction of the conformation distribution of hydrated polyglycine.

Authors:  Ying Yuan; Feng Wang
Journal:  J Chem Phys       Date:  2021-09-07       Impact factor: 4.304

4.  Deriving a Polarizable Force Field for Biomolecular Building Blocks with Minimal Empirical Calibration.

Authors:  Koen M Visscher; Daan P Geerke
Journal:  J Phys Chem B       Date:  2020-02-19       Impact factor: 2.991

5.  A generic force field for protein coarse-grained molecular dynamics simulation.

Authors:  Junfeng Gu; Fang Bai; Honglin Li; Xicheng Wang
Journal:  Int J Mol Sci       Date:  2012-11-08       Impact factor: 5.923

6.  Elucidating a key component of cancer metastasis: CXCL12 (SDF-1α) binding to CXCR4.

Authors:  Phanourios Tamamis; Christodoulos A Floudas
Journal:  J Chem Inf Model       Date:  2014-04-08       Impact factor: 4.956

  6 in total

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