Literature DB >> 18205440

Entropy-energy decomposition from nonequilibrium work trajectories.

Jeremiah Nummela1, Faten Yassin, Ioan Andricioaei.   

Abstract

We derive expressions for the equilibrium entropy and energy changes in the context of the Jarzynski equality relating nonequilibrium work to equilibrium free energy. The derivation is based on a stochastic path integral technique that reweights paths at different temperatures. Stochastic dynamics generated by either a Langevin equation or a Metropolis Monte Carlo scheme are treated. The approach enables the entropy-energy decomposition from trajectories evolving at a single-temperature and does not require simulations or measurements at two or more temperatures. Both finite difference and analytical formulae are derived. Testing is performed on a prototypical model system and the method is compared with existing thermodynamic integration and thermodynamic perturbation approaches for entropy-energy decomposition. The new formulae are also put in the context of more general, dynamics-independent expressions that derive from either a fluctuation theorem or the Feynman-Kac theorem.

Mesh:

Year:  2008        PMID: 18205440     DOI: 10.1063/1.2817332

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  An experimentally guided umbrella sampling protocol for biomolecules.

Authors:  Maria Mills; Ioan Andricioaei
Journal:  J Chem Phys       Date:  2008-09-21       Impact factor: 3.488

2.  Optimized free energies from bidirectional single-molecule force spectroscopy.

Authors:  David D L Minh; Artur B Adib
Journal:  Phys Rev Lett       Date:  2008-05-06       Impact factor: 9.161

3.  Optimal estimators and asymptotic variances for nonequilibrium path-ensemble averages.

Authors:  David D L Minh; John D Chodera
Journal:  J Chem Phys       Date:  2009-10-07       Impact factor: 3.488

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.