Literature DB >> 18202451

GATA family of transcription factors of vertebrates: phylogenetics and chromosomal synteny.

Chunjiang He1, Hanhua Cheng, Rongjia Zhou.   

Abstract

GATA genes are an evolutionarily conserved family, which encode a group of important transcription factors involved in the regulation of diverse processes including the development of the heart, haematopoietic system and sex gonads. However, the evolutionary history of the GATA family has not been completely understood. We constructed a complete phylogenetic tree with functional domain information of the GATA genes of both vertebrates and several invertebrates,and mapped the GATA genes onto relevant chromosomes. Conserved synteny was observed around the GATA loci on the chromosomes. GATAs have a tendency to segregate onto different chromosomes during evolution. The phylogenetic tree is consistent with the relevant functions of GATA members. Analysis of the zinc finger domain showed that the domain tends to be duplicated during evolution from invertebrates to vertebrates. We propose that the balance between duplications of zinc finger domains and GATA members should be maintained to exert their physiological roles in each evolutionary stage. Therefore,evolutionary pressure on the GATAs must exist to maintain the balance during evolution from invertebrates to vertebrates. These results reveal the evolutionary characteristics of the GATA family and contribute to a better understanding of the relationship between evolution and biological functions of the gene family, which will help to uncover the GATAs' biological roles,evolution and their relationship with associated diseases.

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Year:  2007        PMID: 18202451     DOI: 10.1007/s12038-007-0136-7

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  9 in total

1.  GATA zinc finger interactions modulate DNA binding and transactivation.

Authors:  C D Trainor; R Ghirlando; M A Simpson
Journal:  J Biol Chem       Date:  2000-09-08       Impact factor: 5.157

2.  Molecular evolution of the GATA family of transcription factors: conservation within the DNA-binding domain.

Authors:  J A Lowry; W R Atchley
Journal:  J Mol Evol       Date:  2000-02       Impact factor: 2.395

Review 3.  Functional conservation of hematopoietic factors in Drosophila and vertebrates.

Authors:  N Fossett; R A Schulz
Journal:  Differentiation       Date:  2001-12       Impact factor: 3.880

Review 4.  The GATA family (vertebrates and invertebrates).

Authors:  Roger K Patient; James D McGhee
Journal:  Curr Opin Genet Dev       Date:  2002-08       Impact factor: 5.578

5.  GATA-6 can act as a positive or negative regulator of smooth muscle-specific gene expression.

Authors:  Feng Yin; B Paul Herring
Journal:  J Biol Chem       Date:  2004-11-18       Impact factor: 5.157

6.  An erythrocyte-specific DNA-binding factor recognizes a regulatory sequence common to all chicken globin genes.

Authors:  T Evans; M Reitman; G Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  1988-08       Impact factor: 11.205

7.  GATA-4/5/6, a subfamily of three transcription factors transcribed in developing heart and gut.

Authors:  A C Laverriere; C MacNeill; C Mueller; R E Poelmann; J B Burch; T Evans
Journal:  J Biol Chem       Date:  1994-09-16       Impact factor: 5.157

8.  The GATA family of transcription factors in Arabidopsis and rice.

Authors:  José C Reyes; M Isabel Muro-Pastor; Francisco J Florencio
Journal:  Plant Physiol       Date:  2004-04       Impact factor: 8.340

9.  The N-terminal zinc finger of the erythroid transcription factor GATA-1 binds GATC motifs in DNA.

Authors:  A Newton; J Mackay; M Crossley
Journal:  J Biol Chem       Date:  2001-07-09       Impact factor: 5.157

  9 in total
  8 in total

1.  GATA transcription factors in vertebrates: evolutionary, structural and functional interplay.

Authors:  Yanyan Tang; Yunfei Wei; Wenwu He; Yongbo Wang; Jianing Zhong; Chao Qin
Journal:  Mol Genet Genomics       Date:  2013-12-25       Impact factor: 3.291

Review 2.  Evolutionary Diversity and Function of Metacaspases in Plants: Similar to but Not Caspases.

Authors:  Sung Un Huh
Journal:  Int J Mol Sci       Date:  2022-04-21       Impact factor: 6.208

3.  Characterization of the promoter of the Brugia malayi 12kDa small subunit ribosomal protein (RPS12) gene.

Authors:  Ana de Oliveira; Charles R Katholi; Thomas R Unnasch
Journal:  Int J Parasitol       Date:  2008-02-21       Impact factor: 3.981

Review 4.  Transcription factors in heart: promising therapeutic targets in cardiac hypertrophy.

Authors:  Shrey Kohli; Suchit Ahuja; Vibha Rani
Journal:  Curr Cardiol Rev       Date:  2011-11

Review 5.  Transcription Factors That Govern Development and Disease: An Achilles Heel in Cancer.

Authors:  Dhananjay Huilgol; Prabhadevi Venkataramani; Saikat Nandi; Sonali Bhattacharjee
Journal:  Genes (Basel)       Date:  2019-10-12       Impact factor: 4.096

6.  Multimerization of the GATA4 transcription factor regulates transcriptional activity and cardiomyocyte hypertrophic response.

Authors:  Satoshi Shimizu; Yoichi Sunagawa; Naruto Hajika; Natsumi Yorimitsu; Yasufumi Katanasaka; Masafumi Funamoto; Yusuke Miyazaki; Nurmila Sari; Kana Shimizu; Koji Hasegawa; Tatsuya Morimoto
Journal:  Int J Biol Sci       Date:  2022-01-01       Impact factor: 6.580

7.  Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family.

Authors:  William Q Gillis; John St John; Bruce Bowerman; Stephan Q Schneider
Journal:  BMC Evol Biol       Date:  2009-08-20       Impact factor: 3.260

Review 8.  The emerging role of GATA transcription factors in development and disease.

Authors:  Marjolein H F M Lentjes; Hanneke E C Niessen; Yoshimitsu Akiyama; Adriaan P de Bruïne; Veerle Melotte; Manon van Engeland
Journal:  Expert Rev Mol Med       Date:  2016-03-08       Impact factor: 5.600

  8 in total

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