Literature DB >> 18200550

Paleogenomics in vertebrates, or the recovery of lost genomes from the mist of time.

Matthieu Muffato1, Hugues Roest Crollius.   

Abstract

Knowledge of the structure of ancestral genomes provides the basis of a new framework to better represent and interpret results from genomic and evolutionary studies. Because these ancestors lived tens of hundreds of million years ago, this knowledge will inevitably take the form of abstract representations, reconstructed on the basis both of experimental evidence collected on extant genomes and of our understanding of evolutionary processes. This is the field of Paleogenomics, a young discipline that is providing an increasingly precise picture of our ancestral vertebrate genomes based on cytogenetic data, genome sequences and new algorithmic developments. Many recent studies have focused on the ancestral placental mammal and teleost fish genomes, although the outlines of even more distant pre-vertebrate ancestors are being reported. (c) 2008 Wiley Periodicals, Inc.

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Year:  2008        PMID: 18200550     DOI: 10.1002/bies.20707

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  13 in total

1.  Regulatory divergence of the duplicated chromosomal loci sox11a/b by subpartitioning and sequence evolution of enhancers in zebrafish.

Authors:  Pavla Navratilova; David Fredman; Boris Lenhard; Thomas S Becker
Journal:  Mol Genet Genomics       Date:  2009-12-29       Impact factor: 3.291

2.  Maximum Parsimony Inference of Phylogenetic Networks in the Presence of Polyploid Complexes.

Authors:  Zhi Yan; Zhen Cao; Yushu Liu; Huw A Ogilvie; Luay Nakhleh
Journal:  Syst Biol       Date:  2022-04-19       Impact factor: 9.160

3.  Using paleogenomics to study the evolution of gene families: origin and duplication history of the relaxin family hormones and their receptors.

Authors:  Sergey Yegorov; Sara Good
Journal:  PLoS One       Date:  2012-03-21       Impact factor: 3.240

4.  The lineage-specific evolution of aquaporin gene clusters facilitated tetrapod terrestrial adaptation.

Authors:  Roderick Nigel Finn; François Chauvigné; Jón Baldur Hlidberg; Christopher P Cutler; Joan Cerdà
Journal:  PLoS One       Date:  2014-11-26       Impact factor: 3.240

5.  Reconstructing ancestral gene orders with duplications guided by synteny level genome reconstruction.

Authors:  Ashok Rajaraman; Jian Ma
Journal:  BMC Bioinformatics       Date:  2016-11-11       Impact factor: 3.169

6.  Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus.

Authors:  Nikolaos Vakirlis; Véronique Sarilar; Guénola Drillon; Aubin Fleiss; Nicolas Agier; Jean-Philippe Meyniel; Lou Blanpain; Alessandra Carbone; Hugo Devillers; Kenny Dubois; Alexandre Gillet-Markowska; Stéphane Graziani; Nguyen Huu-Vang; Marion Poirel; Cyrielle Reisser; Jonathan Schott; Joseph Schacherer; Ingrid Lafontaine; Bertrand Llorente; Cécile Neuvéglise; Gilles Fischer
Journal:  Genome Res       Date:  2016-05-31       Impact factor: 9.043

7.  The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes.

Authors:  Nathalie Feiner; Gerrit Begemann; Adina J Renz; Axel Meyer; Shigehiro Kuraku
Journal:  BMC Evol Biol       Date:  2009-12-01       Impact factor: 3.260

8.  A methodological framework for the reconstruction of contiguous regions of ancestral genomes and its application to mammalian genomes.

Authors:  Cedric Chauve; Eric Tannier
Journal:  PLoS Comput Biol       Date:  2008-11-28       Impact factor: 4.475

9.  Evolution and differential expression of a vertebrate vitellogenin gene cluster.

Authors:  Roderick Nigel Finn; Jelena Kolarevic; Heidi Kongshaug; Frank Nilsen
Journal:  BMC Evol Biol       Date:  2009-01-05       Impact factor: 3.260

10.  Chromosome number reduction in Eremothecium coryli by two telomere-to-telomere fusions.

Authors:  Jürgen Wendland; Andrea Walther
Journal:  Genome Biol Evol       Date:  2014-05-06       Impact factor: 3.416

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