Literature DB >> 18199459

Distribution of phylogenetic diversity under random extinction.

Beáta Faller1, Fabio Pardi, Mike Steel.   

Abstract

Phylogenetic diversity is a measure for describing how much of an evolutionary tree is spanned by a subset of species. If one applies this to the unknown subset of current species that will still be present at some future time, then this 'future phylogenetic diversity' provides a measure of the impact of various extinction scenarios in biodiversity conservation. In this paper, we study the distribution of future phylogenetic diversity under a simple model of extinction (a generalized 'field of bullets' model). We show that the distribution of future phylogenetic diversity converges to a normal distribution as the number of species grows, under mild conditions, which are necessary. We also describe an algorithm to compute the distribution efficiently, provided the edge lengths are integral, and briefly outline the significance of our findings for biodiversity conservation.

Mesh:

Year:  2007        PMID: 18199459     DOI: 10.1016/j.jtbi.2007.11.034

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  7 in total

1.  Diversity, disparity, and evolutionary rate estimation for unresolved Yule trees.

Authors:  Forrest W Crawford; Marc A Suchard
Journal:  Syst Biol       Date:  2013-02-15       Impact factor: 15.683

2.  The mean and variance of phylogenetic diversity under rarefaction.

Authors:  David A Nipperess; Frederick A Matsen
Journal:  Methods Ecol Evol       Date:  2013-06-01       Impact factor: 7.781

3.  A phylogenetic approach for weighting genetic sequences.

Authors:  Nicola De Maio; Alexander V Alekseyenko; William J Coleman-Smith; Fabio Pardi; Marc A Suchard; Asif U Tamuri; Jakub Truszkowski; Nick Goldman
Journal:  BMC Bioinformatics       Date:  2021-05-28       Impact factor: 3.169

4.  Phylogenetically clustered extinction risks do not substantially prune the Tree of Life.

Authors:  Rakesh K Parhar; Arne Ø Mooers
Journal:  PLoS One       Date:  2011-08-10       Impact factor: 3.240

5.  Conserving the functional and phylogenetic trees of life of European tetrapods.

Authors:  Wilfried Thuiller; Luigi Maiorano; Florent Mazel; François Guilhaumon; Gentile Francesco Ficetola; Sébastien Lavergne; Julien Renaud; Cristina Roquet; David Mouillot
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-02-19       Impact factor: 6.237

6.  Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions.

Authors:  Sacha Laurent; Marc Robinson-Rechavi; Nicolas Salamin
Journal:  BMC Evol Biol       Date:  2015-08-11       Impact factor: 3.260

7.  Ranking Mammal Species for Conservation and the Loss of Both Phylogenetic and Trait Diversity.

Authors:  David W Redding; Arne O Mooers
Journal:  PLoS One       Date:  2015-12-02       Impact factor: 3.240

  7 in total

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