Literature DB >> 18192396

Maintenance forced by a restriction-modification system can be modulated by a region in its modification enzyme not essential for methyltransferase activity.

Satona Ohno1, Naofumi Handa, Miki Watanabe-Matsui, Noriko Takahashi, Ichizo Kobayashi.   

Abstract

Several type II restriction-modification gene complexes can force their maintenance on their host bacteria by killing cells that have lost them in a process called postsegregational killing or genetic addiction. It is likely to proceed by dilution of the modification enzyme molecule during rounds of cell division following the gene loss, which exposes unmethylated recognition sites on the newly replicated chromosomes to lethal attack by the remaining restriction enzyme molecules. This process is in apparent contrast to the process of the classical types of postsegregational killing systems, in which built-in metabolic instability of the antitoxin allows release of the toxin for lethal action after the gene loss. In the present study, we characterize a mutant form of the EcoRII gene complex that shows stronger capacity in such maintenance. This phenotype is conferred by an L80P amino acid substitution (T239C nucleotide substitution) mutation in the modification enzyme. This mutant enzyme showed decreased DNA methyltransferase activity at a higher temperature in vivo and in vitro than the nonmutated enzyme, although a deletion mutant lacking the N-terminal 83 amino acids did not lose activity at either of the temperatures tested. Under a condition of inhibited protein synthesis, the activity of the L80P mutant was completely lost at a high temperature. In parallel, the L80P mutant protein disappeared more rapidly than the wild-type protein. These results demonstrate that the capability of a restriction-modification system in forcing maintenance on its host can be modulated by a region of its antitoxin, the modification enzyme, as in the classical postsegregational killing systems.

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Year:  2008        PMID: 18192396      PMCID: PMC2258900          DOI: 10.1128/JB.01319-07

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  66 in total

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2.  Evolution of sequence recognition by restriction-modification enzymes: selective pressure for specificity decrease.

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3.  Antisense RNA regulation of the par post-segregational killing system: structural analysis and mechanism of binding of the antisense RNA, RNAII and its target, RNAI.

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4.  The ratio between CcdA and CcdB modulates the transcriptional repression of the ccd poison-antidote system.

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Review 5.  Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution.

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Journal:  Nucleic Acids Res       Date:  2001-09-15       Impact factor: 16.971

6.  Experimental genome evolution: large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex.

Authors:  N Handa; Y Nakayama; M Sadykov; I Kobayashi
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7.  DNA methylation at the CfrBI site is involved in expression control in the CfrBI restriction-modification system.

Authors:  I V Beletskaya; M V Zakharova; M G Shlyapnikov; L M Semenova; A S Solonin
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8.  Diversity of restriction-modification gene homologues in Helicobacter pylori.

Authors:  A Nobusato; I Uchiyama; I Kobayashi
Journal:  Gene       Date:  2000-12-23       Impact factor: 3.688

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Review 10.  Integrons: natural tools for bacterial genome evolution.

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Review 2.  Evolutionary Genomics of Defense Systems in Archaea and Bacteria.

Authors:  Eugene V Koonin; Kira S Makarova; Yuri I Wolf
Journal:  Annu Rev Microbiol       Date:  2017-06-28       Impact factor: 15.500

Review 3.  Conflicts targeting epigenetic systems and their resolution by cell death: novel concepts for methyl-specific and other restriction systems.

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Journal:  DNA Res       Date:  2010-11-08       Impact factor: 4.458

4.  IS-linked movement of a restriction-modification system.

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Journal:  PLoS One       Date:  2011-01-31       Impact factor: 3.240

Review 5.  Plasmid addiction systems: perspectives and applications in biotechnology.

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Journal:  Microb Biotechnol       Date:  2010-11       Impact factor: 5.813

6.  Characterizing the DNA Methyltransferases of Haloferax volcanii via Bioinformatics, Gene Deletion, and SMRT Sequencing.

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7.  Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases.

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8.  Methylome diversification through changes in DNA methyltransferase sequence specificity.

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Review 9.  To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems.

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10.  5-azacytidine induces transcriptome changes in Escherichia coli via DNA methylation-dependent and DNA methylation-independent mechanisms.

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