Literature DB >> 18192060

Presence of tRNA-dependent pathways correlates with high cysteine content in methanogenic Archaea.

Liron Klipcan1, Milana Frenkel-Morgenstern, Mark G Safro.   

Abstract

Archeal proteomes can be clustered into two groups based on their cysteine content. One group of proteomes displays a low cysteine content ( approximately 0.7% of the entire proteome), whereas the second group contains twice as many cysteines as the first ( approximately 1.3%). All cysteine-rich organisms belong to the methanogenic Archaea, which generates special cysteine clusters associated with primitive metabolic reactions. Our findings suggest that cysteine plays an important role in early forms of life.

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Year:  2008        PMID: 18192060     DOI: 10.1016/j.tig.2007.11.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  10 in total

1.  Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea.

Authors:  Yuchen Liu; Akiyoshi Nakamura; Yuto Nakazawa; Nozomi Asano; Kara A Ford; Michael J Hohn; Isao Tanaka; Min Yao; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

Review 2.  Amino acid modifications on tRNA.

Authors:  Jing Yuan; Kelly Sheppard; Dieter Söll
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2008-07       Impact factor: 3.848

3.  A pursuit of lineage-specific and niche-specific proteome features in the world of archaea.

Authors:  Anindya Roy Chowdhury; Chitra Dutta
Journal:  BMC Genomics       Date:  2012-06-12       Impact factor: 3.969

4.  An ancient family of SelB elongation factor-like proteins with a broad but disjunct distribution across archaea.

Authors:  Gemma C Atkinson; Vasili Hauryliuk; Tanel Tenson
Journal:  BMC Evol Biol       Date:  2011-01-21       Impact factor: 3.260

5.  Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14.

Authors:  Sheena Menezes; Kirk W Gaston; Kady L Krivos; Ethel E Apolinario; Norbert O Reich; Kevin R Sowers; Patrick A Limbach; John J Perona
Journal:  Nucleic Acids Res       Date:  2011-06-21       Impact factor: 16.971

6.  The mechanistic and evolutionary aspects of the 2'- and 3'-OH paradigm in biosynthetic machinery.

Authors:  Mark Safro; Liron Klipcan
Journal:  Biol Direct       Date:  2013-07-08       Impact factor: 4.540

7.  Structural basis for tRNA-dependent cysteine biosynthesis.

Authors:  Meirong Chen; Koji Kato; Yume Kubo; Yoshikazu Tanaka; Yuchen Liu; Feng Long; William B Whitman; Pascal Lill; Christos Gatsogiannis; Stefan Raunser; Nobutaka Shimizu; Akira Shinoda; Akiyoshi Nakamura; Isao Tanaka; Min Yao
Journal:  Nat Commun       Date:  2017-11-15       Impact factor: 14.919

8.  RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea.

Authors:  Takahito Mukai; Ana Crnković; Takuya Umehara; Natalia N Ivanova; Nikos C Kyrpides; Dieter Söll
Journal:  mBio       Date:  2017-05-09       Impact factor: 7.867

9.  Indirect Routes to Aminoacyl-tRNA: The Diversity of Prokaryotic Cysteine Encoding Systems.

Authors:  Takahito Mukai; Kazuaki Amikura; Xian Fu; Dieter Söll; Ana Crnković
Journal:  Front Genet       Date:  2022-01-03       Impact factor: 4.599

10.  EvoProDom: evolutionary modeling of protein families by assessing translocations of protein domains.

Authors:  Gon Carmi; Alessandro Gorohovski; Milana Frenkel-Morgenstern
Journal:  FEBS Open Bio       Date:  2021-08-21       Impact factor: 2.693

  10 in total

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