Literature DB >> 18189394

Mechanism of product release in NO detoxification from Mycobacterium tuberculosis truncated hemoglobin N.

Marcelo A Martí1, Axel Bidon-Chanal, Alejandro Crespo, Syun-Ru Yeh, Victor Guallar, F Javier Luque, Darío A Estrin.   

Abstract

The capability of Mycobacterium tuberculosis to rest in latency in the infected organism appears to be related to the disposal of detoxification mechanisms, which converts the nitric oxide (NO) produced by macrophages during the initial growth infection stage into a nitrate anion. Such a reaction appears to be associated with the truncated hemoglobin N (trHbN). Even though previous experimental and theoretical studies have examined the pathways used by NO and O2 to access the heme cavity, the eggression pathway of the nitrate anion is still a challenging question. In this work we present results obtained by means of classical and quantum chemistry simulations that show that trHbN is able to release rapidly the nitrate anion using an eggression pathway other than those used for the entry of both O2 and NO and that its release is promoted by hydration of the heme cavity. These results provide a detailed understanding of the molecular basis of the NO detoxification mechanism used by trHbN to guarantee an efficient NO detoxification and thus warrant survival of the microorganism under stress conditions.

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Year:  2008        PMID: 18189394     DOI: 10.1021/ja076853+

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Ligand binding to truncated hemoglobin N from Mycobacterium tuberculosis is strongly modulated by the interplay between the distal heme pocket residues and internal water.

Authors:  Yannick H Ouellet; Richard Daigle; Patrick Lagüe; David Dantsker; Mario Milani; Martino Bolognesi; Joel M Friedman; Michel Guertin
Journal:  J Biol Chem       Date:  2008-08-02       Impact factor: 5.157

2.  Hydrophobic effect drives oxygen uptake in myoglobin via histidine E7.

Authors:  Leonardo Boechi; Mehrnoosh Arrar; Marcelo A Martí; John S Olson; Adrián E Roitberg; Darío A Estrin
Journal:  J Biol Chem       Date:  2013-01-07       Impact factor: 5.157

3.  Quantitative analysis of ligand migration from transition networks.

Authors:  Sabyashachi Mishra; Markus Meuwly
Journal:  Biophys J       Date:  2010-12-15       Impact factor: 4.033

4.  Role of the distal hydrogen-bonding network in regulating oxygen affinity in the truncated hemoglobin III from Campylobacter jejuni.

Authors:  Pau Arroyo Mañez; Changyuan Lu; Leonardo Boechi; Marcelo A Martí; Mark Shepherd; Jayne Louise Wilson; Robert K Poole; F Javier Luque; Syun-Ru Yeh; Darío A Estrin
Journal:  Biochemistry       Date:  2011-04-25       Impact factor: 3.162

5.  Nitrate respiration protects hypoxic Mycobacterium tuberculosis against acid- and reactive nitrogen species stresses.

Authors:  Mai Ping Tan; Patricia Sequeira; Wen Wei Lin; Wai Yee Phong; Penelope Cliff; Seow Hwee Ng; Boon Heng Lee; Luis Camacho; Dirk Schnappinger; Sabine Ehrt; Thomas Dick; Kevin Pethe; Sylvie Alonso
Journal:  PLoS One       Date:  2010-10-26       Impact factor: 3.240

6.  Nitric oxide dynamics in truncated hemoglobin: docking sites, migration pathways, and vibrational spectroscopy from molecular dynamics simulations.

Authors:  Sabyashachi Mishra; Markus Meuwly
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

7.  Role of Pre-A motif in nitric oxide scavenging by truncated hemoglobin, HbN, of Mycobacterium tuberculosis.

Authors:  Amrita Lama; Sudesh Pawaria; Axel Bidon-Chanal; Arvind Anand; José Luis Gelpí; Swati Arya; Marcelo Martí; Dario A Estrin; F Javier Luque; Kanak L Dikshit
Journal:  J Biol Chem       Date:  2009-03-27       Impact factor: 5.157

8.  Ligand migration in the truncated hemoglobin-II from Mycobacterium tuberculosis: the role of G8 tryptophan.

Authors:  Victor Guallar; Changyuan Lu; Kenneth Borrelli; Tsuyoshi Egawa; Syun-Ru Yeh
Journal:  J Biol Chem       Date:  2008-11-18       Impact factor: 5.157

9.  Ligand uptake in Mycobacterium tuberculosis truncated hemoglobins is controlled by both internal tunnels and active site water molecules.

Authors:  Ignacio Boron; Juan Pablo Bustamante; Kelly S Davidge; Sandip Singh; Lesley Ah Bowman; Mariana Tinajero-Trejo; Sebastián Carballal; Rafael Radi; Robert K Poole; Kanak Dikshit; Dario A Estrin; Marcelo A Marti; Leonardo Boechi
Journal:  F1000Res       Date:  2015-01-23

10.  Theoretical characterization of substrate access/exit channels in the human cytochrome P450 3A4 enzyme: involvement of phenylalanine residues in the gating mechanism.

Authors:  Dan Fishelovitch; Sason Shaik; Haim J Wolfson; Ruth Nussinov
Journal:  J Phys Chem B       Date:  2009-10-01       Impact factor: 2.991

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