Literature DB >> 18187656

Designed protein-protein association.

Dirk Grueninger1, Nora Treiber, Mathias O P Ziegler, Jochen W A Koetter, Monika-Sarah Schulze, Georg E Schulz.   

Abstract

The analysis of natural contact interfaces between protein subunits and between proteins has disclosed some general rules governing their association. We have applied these rules to produce a number of novel assemblies, demonstrating that a given protein can be engineered to form contacts at various points of its surface. Symmetry plays an important role because it defines the multiplicity of a designed contact and therefore the number of required mutations. Some of the proteins needed only a single side-chain alteration in order to associate to a higher-order complex. The mobility of the buried side chains has to be taken into account. Four assemblies have been structurally elucidated. Comparisons between the designed contacts and the results will provide useful guidelines for the development of future architectures.

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Year:  2008        PMID: 18187656     DOI: 10.1126/science.1150421

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  44 in total

1.  Computational design of a protein crystal.

Authors:  Christopher J Lanci; Christopher M MacDermaid; Seung-gu Kang; Rudresh Acharya; Benjamin North; Xi Yang; X Jade Qiu; William F DeGrado; Jeffery G Saven
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-25       Impact factor: 11.205

2.  Short N-terminal sequences package proteins into bacterial microcompartments.

Authors:  Chenguang Fan; Shouqiang Cheng; Yu Liu; Cristina M Escobar; Christopher S Crowley; Robert E Jefferson; Todd O Yeates; Thomas A Bobik
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

3.  Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states.

Authors:  Kosuke Hashimoto; Anna R Panchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-03       Impact factor: 11.205

4.  Crystal structure of hexokinase KlHxk1 of Kluyveromyces lactis: a molecular basis for understanding the control of yeast hexokinase functions via covalent modification and oligomerization.

Authors:  E Bartholomeus Kuettner; Karina Kettner; Antje Keim; Dmitri I Svergun; Daniela Volke; David Singer; Ralf Hoffmann; Eva-Christina Müller; Albrecht Otto; Thomas M Kriegel; Norbert Sträter
Journal:  J Biol Chem       Date:  2010-10-12       Impact factor: 5.157

5.  Vector description of electric and hydrophobic interactions in protein homodimers.

Authors:  Angel Mozo-Villarías; Juan Cedano; Enrique Querol
Journal:  Eur Biophys J       Date:  2015-12-11       Impact factor: 1.733

6.  Evolutionary diversification of the multimeric states of proteins.

Authors:  Michael Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-08       Impact factor: 11.205

7.  Molecular basis for dimer formation of TRbeta variant D355R.

Authors:  Natalia Jouravel; Elena Sablin; Marie Togashi; John D Baxter; Paul Webb; Robert J Fletterick
Journal:  Proteins       Date:  2009-04

8.  Minimalist design of water-soluble cross-beta architecture.

Authors:  Matthew Biancalana; Koki Makabe; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-04       Impact factor: 11.205

9.  Proteins evolve on the edge of supramolecular self-assembly.

Authors:  Hector Garcia-Seisdedos; Charly Empereur-Mot; Nadav Elad; Emmanuel D Levy
Journal:  Nature       Date:  2017-08-02       Impact factor: 49.962

10.  Assembly reflects evolution of protein complexes.

Authors:  Emmanuel D Levy; Elisabetta Boeri Erba; Carol V Robinson; Sarah A Teichmann
Journal:  Nature       Date:  2008-06-18       Impact factor: 49.962

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