Literature DB >> 1818093

Reaction mechanisms in peptide synthesis. Part 2. Tautomerism of the peptide bond.

J Ciarkowski1, F M Chen, N L Benoiton.   

Abstract

We had concluded in previous work that ring opening of a 2-alkyl-5(4H)-oxazolone by water or ammonia leads to transient high-energy imidol intermediates which instantly tautomerize to the native amides. Using the MOPAC molecular orbital program, detailed geometric and energetic characteristics of the tautomerism of a peptide bond have been determined on the AM1 level. The results demonstrate that tautomerism of a peptide bond comprises a three-stage process involving three successive transition states and a bimolecular mechanism: (i) E----Z peptide bond isomerization followed by dimerization, (ii) concerted double-hydrogen exchange leading to an alpha-hydroxyimine (imidic acid) followed by splitting of the dimer, and (iii) Z----E N-methylimine inversion. While pathway (iii----ii----i) is predicted as a feasible route terminating in the formation of a peptide bond, the inverse route (iii----ii----i) is excluded as a possible initial step in the generation of a 5(4H)-oxazolone intermediate.

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Year:  1991        PMID: 1818093     DOI: 10.1007/BF00135317

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  2 in total

1.  THE INFRARED ASSOCIATION SPECTRA OF AMIDES IN SOLUTION AND THEIR RELATION TO THE SPECTRA OF POLYPEPTIDES.

Authors:  R M Badger; H Rubalcava
Journal:  Proc Natl Acad Sci U S A       Date:  1954-01       Impact factor: 11.205

2.  Reaction mechanisms in peptide synthesis. Part 1. Semiquantitative characteristics of the reactivity of 2-methyl-5(4H)-oxazolone with water and ammonia in the gas phase and weakly polar media.

Authors:  J Ciarkowski; F M Chen; N L Benoiton
Journal:  J Comput Aided Mol Des       Date:  1991-12       Impact factor: 3.686

  2 in total

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