Literature DB >> 18177002

Combined Approaches to Site-Specific Modification of RNA.

Christine S Chow1, Santosh K Mahto, Tek N Lamichhane.   

Abstract

Both natural and unnatural modifications in RNA are of interest to biologists and chemists. More than 100 different analogues of the four standard RNA nucleosides have been identified in nature. Unnatural modifications are useful for structure and mechanistic studies of RNA. This Review highlights chemical, enzymatic, and combined (semisynthesis) approaches to generate site specifically modified RNAs. The availability of these methods for site-specific modifications of RNAs of all sizes is important in order to study the relationships between RNA chemical composition, structure, and function.

Entities:  

Year:  2008        PMID: 18177002      PMCID: PMC2535795          DOI: 10.1021/cb7002225

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  58 in total

1.  Optimizing splinted ligation of highly structured small RNAs.

Authors:  Wolfram C Kurschat; Julius Müller; Richard Wombacher; Mark Helm
Journal:  RNA       Date:  2005-10-26       Impact factor: 4.942

2.  Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry.

Authors:  S C Pomerantz; J A McCloskey
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

Review 3.  Identification of modified residues in RNAs by reverse transcription-based methods.

Authors:  Yuri Motorin; Sébastien Muller; Isabelle Behm-Ansmant; Christiane Branlant
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

4.  Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing.

Authors:  Y T Yu; M D Shu; J A Steitz
Journal:  EMBO J       Date:  1998-10-01       Impact factor: 11.598

5.  RNA synthesis using a universal, base-stable allyl linker.

Authors:  X Zhang; B L Gaffney; R A Jones
Journal:  Nucleic Acids Res       Date:  1997-10-15       Impact factor: 16.971

6.  Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA.

Authors:  M Meroueh; P J Grohar; J Qiu; J SantaLucia; S A Scaringe; C S Chow
Journal:  Nucleic Acids Res       Date:  2000-05-15       Impact factor: 16.971

7.  Hydrophobic, Non-Hydrogen-Bonding Bases and Base Pairs in DNA.

Authors:  Barbara A Schweitzer; Eric T Kool
Journal:  J Am Chem Soc       Date:  1995-02-22       Impact factor: 15.419

8.  Synthesis of 6-(2-thienyl)purine nucleoside derivatives that form unnatural base pairs with pyridin-2-one nucleosides.

Authors:  T Fujiwara; M Kimoto; H Sugiyama; I Hirao; S Yokoyama
Journal:  Bioorg Med Chem Lett       Date:  2001-08-20       Impact factor: 2.823

9.  New synthetic routes to synthons suitable for 2'-O-allyloligoribonucleotide assembly.

Authors:  B S Sproat; A M Iribarren; R G Garcia; B Beijer
Journal:  Nucleic Acids Res       Date:  1991-02-25       Impact factor: 16.971

10.  Properties of a U1/mRNA 5' splice site duplex containing pseudouridine as measured by thermodynamic and NMR methods.

Authors:  K B Hall; L W McLaughlin
Journal:  Biochemistry       Date:  1991-02-19       Impact factor: 3.162

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  6 in total

Review 1.  Fluorescent analogs of biomolecular building blocks: design, properties, and applications.

Authors:  Renatus W Sinkeldam; Nicholas J Greco; Yitzhak Tor
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

2.  Polymerase-Mediated Site-Specific Incorporation of a Synthetic Fluorescent Isomorphic G Surrogate into RNA.

Authors:  Yao Li; Andrea Fin; Lisa McCoy; Yitzhak Tor
Journal:  Angew Chem Int Ed Engl       Date:  2016-12-21       Impact factor: 15.336

3.  A new usage of functionalized oligodeoxynucleotide probe for site-specific modification of a guanine base within RNA.

Authors:  Kazumitsu Onizuka; Yosuke Taniguchi; Shigeki Sasaki
Journal:  Nucleic Acids Res       Date:  2010-01-31       Impact factor: 16.971

4.  Probing the stabilizing effects of modified nucleotides in the bacterial decoding region of 16S ribosomal RNA.

Authors:  Santosh K Mahto; Christine S Chow
Journal:  Bioorg Med Chem       Date:  2013-03-21       Impact factor: 3.641

5.  Programmable sequence-specific click-labeling of RNA using archaeal box C/D RNP methyltransferases.

Authors:  Migle Tomkuviene; Béatrice Clouet-d'Orval; Ignas Cerniauskas; Elmar Weinhold; Saulius Klimasauskas
Journal:  Nucleic Acids Res       Date:  2012-05-07       Impact factor: 16.971

Review 6.  Strategies for Covalent Labeling of Long RNAs.

Authors:  Hannah Depmeier; Eva Hoffmann; Lisa Bornewasser; Stephanie Kath-Schorr
Journal:  Chembiochem       Date:  2021-06-17       Impact factor: 3.164

  6 in total

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