Literature DB >> 1817606

Spatial visualization of DNA in solution.

I Dustin1, P Furrer, A Stasiak, J Dubochet, J Langowski, E Egelman.   

Abstract

An image analysis method is presented which allows for the reconstruction of the three-dimensional path of filamentous objects from two of their projections. Starting with stereo pairs, this method is used to trace the trajectory of DNA molecules embedded in vitreous ice and leads to a faithful representation of their three-dimensional shape in solution. This computer-aided reconstruction is superior to the subjective three-dimensional impression generated by observation of stereo pairs of micrographs because it enables one to look at the reconstructed molecules from any chosen direction and distance and allows quantitative analysis such as determination of distances, curvature, persistence length, and writhe of DNA molecules in solution.

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Year:  1991        PMID: 1817606     DOI: 10.1016/1047-8477(91)90026-s

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  8 in total

1.  Superhelix dimensions of a 1868 base pair plasmid determined by scanning force microscopy in air and in aqueous solution.

Authors:  K Rippe; N Mücke; J Langowski
Journal:  Nucleic Acids Res       Date:  1997-05-01       Impact factor: 16.971

2.  A chromatin folding model that incorporates linker variability generates fibers resembling the native structures.

Authors:  C L Woodcock; S A Grigoryev; R A Horowitz; N Whitaker
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-01       Impact factor: 11.205

3.  Teaching electron diffraction and imaging of macromolecules.

Authors:  W Chiu; M F Schmid; B V Prasad
Journal:  Biophys J       Date:  1993-05       Impact factor: 4.033

4.  Action at a distance in supercoiled DNA: effects of sequence on slither, branching, and intramolecular concentration.

Authors:  D Sprous; S C Harvey
Journal:  Biophys J       Date:  1996-04       Impact factor: 4.033

5.  Cooperative kinking at distant sites in mechanically stressed DNA.

Authors:  Troy A Lionberger; Davide Demurtas; Guillaume Witz; Julien Dorier; Todd Lillian; Edgar Meyhöfer; Andrzej Stasiak
Journal:  Nucleic Acids Res       Date:  2011-09-14       Impact factor: 16.971

6.  3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy.

Authors:  Arnaud Amzallag; Cédric Vaillant; Mathews Jacob; Michael Unser; Jan Bednar; Jason D Kahn; Jacques Dubochet; Andrzej Stasiak; John H Maddocks
Journal:  Nucleic Acids Res       Date:  2006-09-29       Impact factor: 16.971

7.  Chromatin conformation and salt-induced compaction: three-dimensional structural information from cryoelectron microscopy.

Authors:  J Bednar; R A Horowitz; J Dubochet; C L Woodcock
Journal:  J Cell Biol       Date:  1995-12       Impact factor: 10.539

8.  Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles.

Authors:  Davide Demurtas; Arnaud Amzallag; Eric J Rawdon; John H Maddocks; Jacques Dubochet; Andrzej Stasiak
Journal:  Nucleic Acids Res       Date:  2009-03-12       Impact factor: 16.971

  8 in total

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