Literature DB >> 18172161

MicroRNAs in the Drosophila bithorax complex.

Welcome Bender1.   

Abstract

The iab-4 noncoding RNA from the Drosophila bithorax complex is the substrate for a microRNA (miRNA). Gene conversion was used to delete the hairpin precursor of this miRNA; flies homozygous for this deletion are sterile. Surprisingly, this mutation complements with rearrangement breakpoint mutations that disrupt the iab-4 RNA but fails to complement with breaks mapping in the iab-5 through iab-7 regulatory regions. These breaks disrupt the iab-8 RNA, transcribed from the opposite strand. This iab-8 RNA also encodes a miRNA, detected on Northern blots, derived from the hairpin complementary to the iab-4 precursor hairpin. Ultrabithorax is a target of both miRNAs, although its repression is subtle in both cases.

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Year:  2008        PMID: 18172161      PMCID: PMC2151010          DOI: 10.1101/gad.1614208

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  31 in total

1.  Polycomb group repression reduces DNA accessibility.

Authors:  D P Fitzgerald; W Bender
Journal:  Mol Cell Biol       Date:  2001-10       Impact factor: 4.272

2.  The small RNA profile during Drosophila melanogaster development.

Authors:  Alexei A Aravin; Mariana Lagos-Quintana; Abdullah Yalcin; Mihaela Zavolan; Debora Marks; Ben Snyder; Terry Gaasterland; Jutta Meyer; Thomas Tuschl
Journal:  Dev Cell       Date:  2003-08       Impact factor: 12.270

3.  Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci.

Authors:  David M Tyler; Katsutomo Okamura; Wei-Jen Chung; Joshua W Hagen; Eugene Berezikov; Gregory J Hannon; Eric C Lai
Journal:  Genes Dev       Date:  2008-01-01       Impact factor: 11.361

4.  Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex.

Authors:  Esther Bae; Vincent C Calhoun; Michael Levine; Edward B Lewis; Robert A Drewell
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-12       Impact factor: 11.205

5.  Transcription through intergenic chromosomal memory elements of the Drosophila bithorax complex correlates with an epigenetic switch.

Authors:  Gerhard Rank; Matthias Prestel; Renato Paro
Journal:  Mol Cell Biol       Date:  2002-11       Impact factor: 4.272

6.  The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo.

Authors:  Paul B Mason; Kevin Struhl
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

7.  P element homing to the Drosophila bithorax complex.

Authors:  W Bender; A Hudson
Journal:  Development       Date:  2000-09       Impact factor: 6.868

8.  Transcription through the iab-7 cis-regulatory domain of the bithorax complex interferes with maintenance of Polycomb-mediated silencing.

Authors:  Ilham Hogga; François Karch
Journal:  Development       Date:  2002-11       Impact factor: 6.868

9.  MicroRNA targets in Drosophila.

Authors:  Anton J Enright; Bino John; Ulrike Gaul; Thomas Tuschl; Chris Sander; Debora S Marks
Journal:  Genome Biol       Date:  2003-12-12       Impact factor: 13.583

10.  Transcription activates repressed domains in the Drosophila bithorax complex.

Authors:  Welcome Bender; Daniel P Fitzgerald
Journal:  Development       Date:  2002-11       Impact factor: 6.868

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  67 in total

Review 1.  Evolution of microRNA diversity and regulation in animals.

Authors:  Eugene Berezikov
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

2.  A genome-wide transgenic resource for conditional expression of Drosophila microRNAs.

Authors:  Fernando Bejarano; Diane Bortolamiol-Becet; Qi Dai; Kailiang Sun; Abil Saj; Yu-Ting Chou; David R Raleigh; Kevin Kim; Jian-Quan Ni; Hong Duan; Jr-Shiuan Yang; Tudor A Fulga; David Van Vactor; Norbert Perrimon; Eric C Lai
Journal:  Development       Date:  2012-06-28       Impact factor: 6.868

Review 3.  Hox miRNA regulation within the Drosophila Bithorax complex: Patterning behavior.

Authors:  Daniel L Garaulet; Eric C Lai
Journal:  Mech Dev       Date:  2015-08-23       Impact factor: 1.882

4.  Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; Michiel Jan Laurens de Hoon; Yasuhiro Tomaru; Harukazu Suzuki; Yoshihide Hayashizaki; Carsten Olivier Daub
Journal:  RNA Biol       Date:  2011-01-01       Impact factor: 4.652

5.  Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci.

Authors:  David M Tyler; Katsutomo Okamura; Wei-Jen Chung; Joshua W Hagen; Eugene Berezikov; Gregory J Hannon; Eric C Lai
Journal:  Genes Dev       Date:  2008-01-01       Impact factor: 11.361

6.  A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands.

Authors:  Alexander Stark; Natascha Bushati; Calvin H Jan; Pouya Kheradpour; Emily Hodges; Julius Brennecke; David P Bartel; Stephen M Cohen; Manolis Kellis
Journal:  Genes Dev       Date:  2008-01-01       Impact factor: 11.361

Review 7.  Noncoding RNA in development.

Authors:  Paulo P Amaral; John S Mattick
Journal:  Mamm Genome       Date:  2008-10-07       Impact factor: 2.957

8.  The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution.

Authors:  Katsutomo Okamura; Michael D Phillips; David M Tyler; Hong Duan; Yu-ting Chou; Eric C Lai
Journal:  Nat Struct Mol Biol       Date:  2008-03-30       Impact factor: 15.369

9.  In ovo application of antagomiRs indicates a role for miR-196 in patterning the chick axial skeleton through Hox gene regulation.

Authors:  Edwina McGlinn; Soraya Yekta; Jennifer H Mansfield; Jürgen Soutschek; David P Bartel; Clifford J Tabin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-21       Impact factor: 11.205

10.  Identification of soybean microRNAs and their targets.

Authors:  Baohong Zhang; Xiaoping Pan; Edmund J Stellwag
Journal:  Planta       Date:  2008-09-25       Impact factor: 4.116

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