Literature DB >> 18167520

Adhesion between cells, diffusion of growth factors, and elasticity of the AER produce the paddle shape of the chick limb.

Nikodem J Popławski1, Maciej Swat, J Scott Gens, James A Glazier.   

Abstract

A central question in developmental biology is how cells interact to organize into tissues? In this paper, we study the role of mesenchyme-ectoderm interaction in the growing chick limb bud using Glazier and Graner's cellular Potts model, a grid-based stochastic framework designed to simulate cell interactions and movement. We simulate cellular mechanisms including cell adhesion, growth, and division and diffusion of morphogens, to show that differential adhesion between the cells, diffusion of growth factors through the extracellular matrix, and the elastic properties of the apical ectodermal ridge together can produce the proper shape of the limb bud.

Entities:  

Year:  2007        PMID: 18167520      PMCID: PMC2168394          DOI: 10.1016/j.physa.2006.05.028

Source DB:  PubMed          Journal:  Physica A        ISSN: 0378-4371            Impact factor:   3.263


  42 in total

Review 1.  Limb development: an international model for vertebrate pattern formation.

Authors:  C Tickle
Journal:  Int J Dev Biol       Date:  2000       Impact factor: 2.203

2.  A re-examination of proximodistal patterning during vertebrate limb development.

Authors:  Andrew T Dudley; María A Ros; Clifford J Tabin
Journal:  Nature       Date:  2002-08-01       Impact factor: 49.962

3.  Liquid properties of embryonic tissues: Measurement of interfacial tensions.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-04-04       Impact factor: 9.161

4.  Role of transforming growth factor-beta in chondrogenic pattern formation in the embryonic limb: stimulation of mesenchymal condensation and fibronectin gene expression by exogenenous TGF-beta and evidence for endogenous TGF-beta-like activity.

Authors:  C M Leonard; H M Fuld; D A Frenz; S A Downie; J Massagué; S A Newman
Journal:  Dev Biol       Date:  1991-05       Impact factor: 3.582

Review 5.  The roles of FGFs in the early development of vertebrate limbs.

Authors:  G R Martin
Journal:  Genes Dev       Date:  1998-06-01       Impact factor: 11.361

6.  A series of normal stages in the development of the chick embryo.

Authors:  V HAMBURGER; H L HAMILTON
Journal:  J Morphol       Date:  1951-01       Impact factor: 1.804

7.  Dynamics of skeletal pattern formation in developing chick limb.

Authors:  S A Newman; H L Frisch
Journal:  Science       Date:  1979-08-17       Impact factor: 47.728

8.  FGF-4 replaces the apical ectodermal ridge and directs outgrowth and patterning of the limb.

Authors:  L Niswander; C Tickle; A Vogel; I Booth; G R Martin
Journal:  Cell       Date:  1993-11-05       Impact factor: 41.582

9.  Fgf10 is essential for limb and lung formation.

Authors:  K Sekine; H Ohuchi; M Fujiwara; M Yamasaki; T Yoshizawa; T Sato; N Yagishita; D Matsui; Y Koga; N Itoh; S Kato
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

10.  Fibroblast growth factor receptor 2 (FGFR2)-mediated reciprocal regulation loop between FGF8 and FGF10 is essential for limb induction.

Authors:  X Xu; M Weinstein; C Li; M Naski; R I Cohen; D M Ornitz; P Leder; C Deng
Journal:  Development       Date:  1998-02       Impact factor: 6.868

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  22 in total

Review 1.  Coordinated action of N-CAM, N-cadherin, EphA4, and ephrinB2 translates genetic prepatterns into structure during somitogenesis in chick.

Authors:  James A Glazier; Ying Zhang; Maciej Swat; Benjamin Zaitlen; Santiago Schnell
Journal:  Curr Top Dev Biol       Date:  2008       Impact factor: 4.897

2.  Simulation of single-species bacterial-biofilm growth using the Glazier-Graner-Hogeweg model and the CompuCell3D modeling environment.

Authors:  Nikodem J Popławski; Abbas Shirinifard; Maciej Swat; James A Glazier
Journal:  Math Biosci Eng       Date:  2008-04       Impact factor: 2.080

3.  Adhesion failures determine the pattern of choroidal neovascularization in the eye: a computer simulation study.

Authors:  Abbas Shirinifard; James Alexander Glazier; Maciej Swat; J Scott Gens; Fereydoon Family; Yi Jiang; Hans E Grossniklaus
Journal:  PLoS Comput Biol       Date:  2012-05-03       Impact factor: 4.475

Review 4.  Evolving homeostatic tissue using genetic algorithms.

Authors:  Philip Gerlee; David Basanta; Alexander R A Anderson
Journal:  Prog Biophys Mol Biol       Date:  2011-03-23       Impact factor: 3.667

5.  Front instabilities and invasiveness of simulated avascular tumors.

Authors:  Nikodem J Popławski; Ubirajara Agero; J Scott Gens; Maciej Swat; James A Glazier; Alexander R A Anderson
Journal:  Bull Math Biol       Date:  2009-02-21       Impact factor: 1.758

6.  A mathematical model of tumour self-seeding reveals secondary metastatic deposits as drivers of primary tumour growth.

Authors:  Jacob G Scott; David Basanta; Alexander R A Anderson; Philip Gerlee
Journal:  J R Soc Interface       Date:  2013-02-20       Impact factor: 4.118

7.  Limbs made to measure.

Authors:  Anna Kicheva; James Briscoe
Journal:  PLoS Biol       Date:  2010-07-13       Impact factor: 8.029

8.  The role of spatially controlled cell proliferation in limb bud morphogenesis.

Authors:  Bernd Boehm; Henrik Westerberg; Gaja Lesnicar-Pucko; Sahdia Raja; Michael Rautschka; James Cotterell; Jim Swoger; James Sharpe
Journal:  PLoS Biol       Date:  2010-07-13       Impact factor: 8.029

9.  Front instabilities and invasiveness of simulated 3D avascular tumors.

Authors:  Nikodem J Poplawski; Abbas Shirinifard; Ubirajara Agero; J Scott Gens; Maciej Swat; James A Glazier
Journal:  PLoS One       Date:  2010-05-26       Impact factor: 3.240

10.  3D multi-cell simulation of tumor growth and angiogenesis.

Authors:  Abbas Shirinifard; J Scott Gens; Benjamin L Zaitlen; Nikodem J Popławski; Maciej Swat; James A Glazier
Journal:  PLoS One       Date:  2009-10-16       Impact factor: 3.240

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