Literature DB >> 18166144

Using silica particles to isolate total RNA from plant tissues recalcitrant to extraction in guanidine thiocyanate.

Ling-Wen Ding1, Qiao-Yang Sun, Zhao-Yu Wang, Yong-Bin Sun, Zeng-Fu Xu.   

Abstract

The most commonly used protocol of the RNA isolation, the guanidine thiocyanate method, was unsuitable for recalcitrant plant tissues containing a large amount of storage proteins and secondary metabolites. We demonstrated that RNA could bind to the silica particles, which have been used successfully in DNA isolation from various sources, under a high concentration of NaCl in the presence of ethanol and sodium acetate. Based on this observation, an efficient, inexpensive, and highly reproducible technique, the acid phenol-silica method, was developed to isolate high-quality RNAs from various plant tissues recalcitrant to extraction in guanidine thiocyanate.

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Year:  2007        PMID: 18166144     DOI: 10.1016/j.ab.2007.11.030

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  20 in total

1.  Isolation and characterization of an ubiquitin extension protein gene (JcUEP) promoter from Jatropha curcas.

Authors:  Yan-Bin Tao; Liang-Liang He; Long-Jian Niu; Zeng-Fu Xu
Journal:  Planta       Date:  2014-12-14       Impact factor: 4.116

2.  An improved method for RNA isolation and cDNA library construction from immature seeds of Jatropha curcas L.

Authors:  Jatinder Singh Sangha; Keyu Gu; Jatinder Kaur; Zhongchao Yin
Journal:  BMC Res Notes       Date:  2010-05-05

3.  Isolation and characterization of the Jatropha curcas APETALA1 (JcAP1) promoter conferring preferential expression in inflorescence buds.

Authors:  Yan-Bin Tao; Liang-Liang He; Longjian Niu; Zeng-Fu Xu
Journal:  Planta       Date:  2016-04-19       Impact factor: 4.116

4.  A promoter analysis of MOTHER OF FT AND TFL1 1 (JcMFT1), a seed-preferential gene from the biofuel plant Jatropha curcas.

Authors:  Yan-Bin Tao; Li Luo; Liang-Liang He; Jun Ni; Zeng-Fu Xu
Journal:  J Plant Res       Date:  2014-05-31       Impact factor: 2.629

5.  Comparative assessment of four RNA extraction methods and modification to obtain high-quality RNA from Parthenium hysterophorus leaf.

Authors:  Javed Ahmad; M Affan Baig; Arlene A Ali; Asma Al-Huqail; M M Ibrahim; M Irfan Qureshi
Journal:  3 Biotech       Date:  2017-10-16       Impact factor: 2.406

6.  Isolation of high quality RNA and construction of a suppression subtractive hybridization library from ramie (Boehmeria nivea L. Gaud.).

Authors:  Xu-xia Wang; Bo Wang; Li-jun Liu; Xiao-ping Cui; Jin-yu Yang; Hui Wang; Hui Jiang; Bei-bei Luo; Zhu Long; Wen-xiang Dou; Na Zhang; Ding-xiang Peng
Journal:  Mol Biol Rep       Date:  2009-08-13       Impact factor: 2.316

7.  An RNA isolation system for plant tissues rich in secondary metabolites.

Authors:  Sanjay Ghawana; Asosii Paul; Hitesh Kumar; Arun Kumar; Harsharan Singh; Pardeep K Bhardwaj; Arti Rani; Ravi S Singh; Jyoti Raizada; Kashmir Singh; Sanjay Kumar
Journal:  BMC Res Notes       Date:  2011-03-28

8.  Selection of reliable reference genes for gene expression studies in the biofuel plant Jatropha curcas using real-time quantitative PCR.

Authors:  Lu Zhang; Liang-Liang He; Qian-Tang Fu; Zeng-Fu Xu
Journal:  Int J Mol Sci       Date:  2013-12-13       Impact factor: 5.923

9.  An efficient protocol for Agrobacterium-mediated transformation of the biofuel plant Jatropha curcas by optimizing kanamycin concentration and duration of delayed selection.

Authors:  Qiantang Fu; Chaoqiong Li; Mingyong Tang; Yan-Bin Tao; Bang-Zhen Pan; Lu Zhang; Longjian Niu; Huiying He; Xiulan Wang; Zeng-Fu Xu
Journal:  Plant Biotechnol Rep       Date:  2015-11-06       Impact factor: 2.010

10.  Isolation and functional characterization of JcFT, a FLOWERING LOCUS T (FT) homologous gene from the biofuel plant Jatropha curcas.

Authors:  Chaoqiong Li; Li Luo; Qiantang Fu; Longjian Niu; Zeng-Fu Xu
Journal:  BMC Plant Biol       Date:  2014-05-08       Impact factor: 4.215

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