Literature DB >> 18160966

Understanding the molecular machinery of genetics through 3D structures.

Roman A Laskowski1, Janet M Thornton.   

Abstract

Detailed knowledge of the three-dimensional structures of biological molecules has had an enormous impact on all areas of biological science, including genetics, as structure can reveal the fine details of how molecules perform their biological functions. Here we consider how changes in protein sequence affect the corresponding 3D structure, and describe how structural information about proteins, DNA and chromatin has shed light on gene regulatory mechanisms and the storage and transmission of epigenetic information. Finally, we describe how structure determination is benefiting from the high-throughput technologies of the worldwide structural genomics projects.

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Year:  2008        PMID: 18160966     DOI: 10.1038/nrg2273

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  31 in total

1.  Sequence and structure continuity of evolutionary importance improves protein functional site discovery and annotation.

Authors:  A D Wilkins; R Lua; S Erdin; R M Ward; O Lichtarge
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

2.  Next generation tools for the annotation of human SNPs.

Authors:  Rachel Karchin
Journal:  Brief Bioinform       Date:  2009-01       Impact factor: 11.622

3.  Evolutionary history of a specialized p450 propane monooxygenase.

Authors:  Rudi Fasan; Yergalem T Meharenna; Christopher D Snow; Thomas L Poulos; Frances H Arnold
Journal:  J Mol Biol       Date:  2008-06-28       Impact factor: 5.469

4.  Meet me halfway: when genomics meets structural bioinformatics.

Authors:  Sungsam Gong; Catherine L Worth; Tammy M K Cheng; Tom L Blundell
Journal:  J Cardiovasc Transl Res       Date:  2011-02-25       Impact factor: 4.132

5.  Integrated structural and evolutionary analysis reveals common mechanisms underlying adaptive evolution in mammals.

Authors:  Greg Slodkowicz; Nick Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-02       Impact factor: 11.205

Review 6.  Bioinformatic tools for identifying disease gene and SNP candidates.

Authors:  Sean D Mooney; Vidhya G Krishnan; Uday S Evani
Journal:  Methods Mol Biol       Date:  2010

7.  PeptideMine--a webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes.

Authors:  Khader Shameer; Lalima L Madan; Shivamurthy Veeranna; Balasubramanian Gopal; Ramanathan Sowdhamini
Journal:  BMC Bioinformatics       Date:  2010-09-22       Impact factor: 3.169

8.  Graphlet kernels for prediction of functional residues in protein structures.

Authors:  Vladimir Vacic; Lilia M Iakoucheva; Stefano Lonardi; Predrag Radivojac
Journal:  J Comput Biol       Date:  2010-01       Impact factor: 1.479

9.  A novel endoplasmic reticulum export signal: proline at the +2-position from the signal peptide cleavage site.

Authors:  Yoshinori Tsukumo; Satomi Tsukahara; Sakae Saito; Takashi Tsuruo; Akihiro Tomida
Journal:  J Biol Chem       Date:  2009-08-05       Impact factor: 5.157

10.  3PFDB--a database of best representative PSSM profiles (BRPs) of protein families generated using a novel data mining approach.

Authors:  Khader Shameer; Paramasivam Nagarajan; Kumar Gaurav; Ramanathan Sowdhamini
Journal:  BioData Min       Date:  2009-12-04       Impact factor: 2.522

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