Literature DB >> 18155478

Automated classification of mitotic phenotypes of human cells using fluorescent proteins.

N Harder1, R Eils, K Rohr.   

Abstract

High-throughput screens of the gene function provide rapidly increasing amounts of data. In particular, the analysis of image data acquired in genome-wide cell phenotype screens constitutes a substantial bottleneck in the evaluation process and motivates the development of automated image analysis tools for large-scale experiments. In this chapter, we present a computational scheme to process multicell time-lapse images as they are produced in high-throughput screens. We describe an approach to automatically segment and classify cell nuclei into different mitotic phenotypes. This enables automated identification of cell cultures that show an abnormal mitotic behavior. Our scheme proves high classification accuracy, suggesting a promising future for automating the evaluation of high-throughput experiments.

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Year:  2008        PMID: 18155478     DOI: 10.1016/S0091-679X(08)85023-6

Source DB:  PubMed          Journal:  Methods Cell Biol        ISSN: 0091-679X            Impact factor:   1.441


  5 in total

1.  Phenotypic profiling of the human genome reveals gene products involved in plasma membrane targeting of SRC kinases.

Authors:  Julia Ritzerfeld; Steffen Remmele; Tao Wang; Koen Temmerman; Britta Brügger; Sabine Wegehingel; Stella Tournaviti; Jeroen R P M Strating; Felix T Wieland; Beate Neumann; Jan Ellenberg; Chris Lawerenz; Jürgen Hesser; Holger Erfle; Rainer Pepperkok; Walter Nickel
Journal:  Genome Res       Date:  2011-07-27       Impact factor: 9.043

2.  Characterizing protein interactions employing a genome-wide siRNA cellular phenotyping screen.

Authors:  Apichat Suratanee; Martin H Schaefer; Matthew J Betts; Zita Soons; Heiko Mannsperger; Nathalie Harder; Marcus Oswald; Markus Gipp; Ellen Ramminger; Guillermo Marcus; Reinhard Männer; Karl Rohr; Erich Wanker; Robert B Russell; Miguel A Andrade-Navarro; Roland Eils; Rainer König
Journal:  PLoS Comput Biol       Date:  2014-09-25       Impact factor: 4.475

3.  A time-series method for automated measurement of changes in mitotic and interphase duration from time-lapse movies.

Authors:  Frederic D Sigoillot; Jeremy F Huckins; Fuhai Li; Xiaobo Zhou; Stephen T C Wong; Randall W King
Journal:  PLoS One       Date:  2011-09-26       Impact factor: 3.240

4.  miR-17-5p regulates endocytic trafficking through targeting TBC1D2/Armus.

Authors:  Andrius Serva; Bettina Knapp; Yueh-Tso Tsai; Christoph Claas; Tautvydas Lisauskas; Petr Matula; Nathalie Harder; Lars Kaderali; Karl Rohr; Holger Erfle; Roland Eils; Vania Braga; Vytaute Starkuviene
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

5.  Unsupervised automated high throughput phenotyping of RNAi time-lapse movies.

Authors:  Henrik Failmezger; Holger Fröhlich; Achim Tresch
Journal:  BMC Bioinformatics       Date:  2013-10-04       Impact factor: 3.169

  5 in total

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