Literature DB >> 18154317

Unusually strong H-bonding to the heme ligand and fast geminate recombination dynamics of the carbon monoxide complex of Bacillus subtilis truncated hemoglobin.

Alessandro Feis1, Andrea Lapini, Bruno Catacchio, Silvia Brogioni, Paolo Foggi, Emilia Chiancone, Alberto Boffi, Giulietta Smulevich.   

Abstract

The active site of the oxygen-avid truncated hemoglobin from Bacillus subtilis has been characterized by infrared absorption and resonance Raman spectroscopies, and the dynamics of CO rebinding after photolysis has been investigated by picosecond transient absorption spectroscopy. Resonance Raman experiments on the CO bound adduct revealed the presence of two Fe-CO stretching bands at 545 and 520 cm-1, respectively. Accordingly, two C-O stretching bands at 1924 and 1888 cm-1 were observed in infrared absorption and resonance Raman measurements. The very low C-O stretching frequency at 1888 cm-1 (corresponding to the extremely high RR stretching frequency at 545 cm-1) indicates unusually strong hydrogen bonding between CO and distal residues. On the basis of a comparison with other truncated hemoglobin it is envisaged that the two CO conformers are determined by specific interactions with the TrpG8 and TyrB10 residues. Mutation of TrpG8 to Leu deeply alters the hydrogen-bonding network giving rise mainly to a CO conformer characterized by a Fe-CO stretching band at 489 cm-1 and a CO stretching band at 1958 cm-1. Picosecond laser photolysis experiments carried out on the CO bound adduct revealed dynamical processes that take place within a few nanoseconds after photolysis. Picosecond dynamics is largely dominated by CO geminate rebinding and is consistent with strong H-bonding contributions of TyrB10 and TrpG8 to ligand stabilization.

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Year:  2007        PMID: 18154317     DOI: 10.1021/bi701297f

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

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Authors:  Venugopal Karunakaran; Abdelkrim Benabbas; Yuhan Sun; Zhenyu Zhang; Sangita Singh; Ruma Banerjee; Paul M Champion
Journal:  J Phys Chem B       Date:  2010-03-11       Impact factor: 2.991

2.  Spectroscopic characterization of a truncated hemoglobin from the nitrogen-fixing bacterium Herbaspirillum seropedicae.

Authors:  Guilherme Razzera; Javier Vernal; Debora Baruh; Viviane I Serpa; Carolina Tavares; Flávio Lara; Emanuel M Souza; Fábio O Pedrosa; Fábio C L Almeida; Hernán Terenzi; Ana Paula Valente
Journal:  J Biol Inorg Chem       Date:  2008-06-12       Impact factor: 3.358

3.  Ligand migration in the truncated hemoglobin-II from Mycobacterium tuberculosis: the role of G8 tryptophan.

Authors:  Victor Guallar; Changyuan Lu; Kenneth Borrelli; Tsuyoshi Egawa; Syun-Ru Yeh
Journal:  J Biol Chem       Date:  2008-11-18       Impact factor: 5.157

4.  Functional and Spectroscopic Characterization of Chlamydomonas reinhardtii Truncated Hemoglobins.

Authors:  Chiara Ciaccio; Francisco Ocaña-Calahorro; Enrica Droghetti; Grazia R Tundo; Emanuel Sanz-Luque; Fabio Polticelli; Paolo Visca; Giulietta Smulevich; Paolo Ascenzi; Massimo Coletta
Journal:  PLoS One       Date:  2015-05-20       Impact factor: 3.240

5.  Peroxidase activity and involvement in the oxidative stress response of roseobacter denitrificans truncated hemoglobin.

Authors:  Yaya Wang; Xavier Barbeau; Astha Bilimoria; Patrick Lagüe; Manon Couture; Joseph Kuo-Hsiang Tang
Journal:  PLoS One       Date:  2015-02-06       Impact factor: 3.240

6.  Group II truncated haemoglobin YjbI prevents reactive oxygen species-induced protein aggregation in Bacillus subtilis.

Authors:  Takeshi Imai; Ryuta Tobe; Koji Honda; Mai Tanaka; Jun Kawamoto; Hisaaki Mihara
Journal:  Elife       Date:  2022-09-20       Impact factor: 8.713

7.  Following ligand migration pathways from picoseconds to milliseconds in type II truncated hemoglobin from Thermobifida fusca.

Authors:  Agnese Marcelli; Stefania Abbruzzetti; Juan Pablo Bustamante; Alessandro Feis; Alessandra Bonamore; Alberto Boffi; Cristina Gellini; Pier Remigio Salvi; Dario A Estrin; Stefano Bruno; Cristiano Viappiani; Paolo Foggi
Journal:  PLoS One       Date:  2012-07-06       Impact factor: 3.240

  7 in total

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