Literature DB >> 18096512

Interaction of human 3-phosphoglycerate kinase with L-ADP, the mirror image of D-ADP.

Andrea Varga1, Judit Szabó, Beáta Flachner, Béatrice Roy, Peter Konarev, Dmitri Svergun, Péter Závodszky, Christian Périgaud, Tom Barman, Corinne Lionne, Mária Vas.   

Abstract

l-Nucleoside-analogues, mirror images of the natural d-nucleosides, are a new class of antiviral and anticancer agents. In the cell they have to be phosphorylated to pharmacologically active triphosphate forms, the last step seems to involve human 3-phosphoglycerate kinase (hPGK). Here we present a steady state kinetic and biophysical study of the interaction of the model compound l-MgADP with hPGK. l-MgADP is a good substrate with k(cat) and K(m) values of 685s(-1) and 0.27mM, respectively. Double inhibition studies suggest that l-MgADP binds to the specific adenosine-binding site and protects the conformation of hPGK molecule against heat denaturation, as detected by microcalorimetry. Structural details of the interaction in the enzyme active site are different for the d- and l-enantiomers (e.g. the effect of Mg(2+)), but these differences do not prevent the occurrence of the catalytic cycle, which is accompanied by the hinge-bending domain closure, as indicated by SAXS measurements.

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Year:  2007        PMID: 18096512     DOI: 10.1016/j.bbrc.2007.12.061

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  4 in total

1.  Loss of stability and unfolding cooperativity in hPGK1 upon gradual structural perturbation of its N-terminal domain hydrophobic core.

Authors:  Juan Luis Pacheco-García; Dmitry S Loginov; Athi N Naganathan; Pavla Vankova; Mario Cano-Muñoz; Petr Man; Angel L Pey
Journal:  Sci Rep       Date:  2022-10-13       Impact factor: 4.996

2.  Molecular basis for the lack of enantioselectivity of human 3-phosphoglycerate kinase.

Authors:  C Gondeau; L Chaloin; P Lallemand; B Roy; C Périgaud; T Barman; A Varga; M Vas; C Lionne; S T Arold
Journal:  Nucleic Acids Res       Date:  2008-05-07       Impact factor: 16.971

3.  An allosteric signaling pathway of human 3-phosphoglycerate kinase from force distribution analysis.

Authors:  Zoltan Palmai; Christian Seifert; Frauke Gräter; Erika Balog
Journal:  PLoS Comput Biol       Date:  2014-01-23       Impact factor: 4.475

4.  Protein Stability, Folding and Misfolding in Human PGK1 Deficiency.

Authors:  Giovanna Valentini; Maristella Maggi; Angel L Pey
Journal:  Biomolecules       Date:  2013-12-18
  4 in total

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