Literature DB >> 18096112

Parameter expansion for estimation of reduced rank covariance matrices.

Karin Meyer1.   

Abstract

Parameter expanded and standard expectation maximisation algorithms are described for reduced rank estimation of covariance matrices by restricted maximum likelihood, fitting the leading principal components only. Convergence behaviour of these algorithms is examined for several examples and contrasted to that of the average information algorithm, and implications for practical analyses are discussed. It is shown that expectation maximisation type algorithms are readily adapted to reduced rank estimation and converge reliably. However, as is well known for the full rank case, the convergence is linear and thus slow. Hence, these algorithms are most useful in combination with the quadratically convergent average information algorithm, in particular in the initial stages of an iterative solution scheme.

Mesh:

Year:  2007        PMID: 18096112      PMCID: PMC2674917          DOI: 10.1186/1297-9686-40-1-3

Source DB:  PubMed          Journal:  Genet Sel Evol        ISSN: 0999-193X            Impact factor:   4.297


  3 in total

1.  Perils of parsimony: properties of reduced-rank estimates of genetic covariance matrices.

Authors:  Karin Meyer; Mark Kirkpatrick
Journal:  Genetics       Date:  2008-08-30       Impact factor: 4.562

Review 2.  Factor-analytic models for genotype x environment type problems and structured covariance matrices.

Authors:  Karin Meyer
Journal:  Genet Sel Evol       Date:  2009-01-30       Impact factor: 4.297

3.  A data-driven simulation platform to predict cultivars' performances under uncertain weather conditions.

Authors:  Gustavo de Los Campos; Paulino Pérez-Rodríguez; Matthieu Bogard; David Gouache; José Crossa
Journal:  Nat Commun       Date:  2020-09-25       Impact factor: 14.919

  3 in total

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