Literature DB >> 18084090

Crystallization and preliminary X-ray studies of TON_1713 from Thermococcus onnurineus NA1, a putative member of the haloacid dehalogenase superfamily.

Binh Van Le1, Hyun Sook Lee, Yona Cho, Sung Gyun Kang, Dong Young Kim, Yang Gyun Kim, Kyeong Kyu Kim.   

Abstract

The haloacid dehalogenase (HAD) protein superfamily is one of the largest enzyme families and shows hydrolytic activity towards diverse substrates. Structural analyses of enzymes belonging to the HAD family are required to elucidate the molecular basis underlying their broad substrate specificity and reaction mechanism. For this purpose, TON_1713, a hypothetical protein from Thermococcus onnurineus that is a member of the HAD superfamily, was expressed in Escherichia coli, purified and crystallized at 295 K using 1.6 M magnesium sulfate as a precipitant. X-ray diffraction data were collected to 1.8 A resolution using a synchrotron-radiation source. The crystals belong to the triclinic space group P1, with unit-cell parameters a = 52.5, b = 65.8, c = 203.4 A, alpha = 71.1, beta = 79.9, gamma = 74.3 degrees.

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Year:  2007        PMID: 18084090      PMCID: PMC2344112          DOI: 10.1107/S1744309107054747

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

Review 1.  Microbial dehalogenation.

Authors:  D B Janssen; J E Oppentocht; G J Poelarends
Journal:  Curr Opin Biotechnol       Date:  2001-06       Impact factor: 9.740

Review 2.  Phosphoryl group transfer: evolution of a catalytic scaffold.

Authors:  Karen N Allen; Debra Dunaway-Mariano
Journal:  Trends Biochem Sci       Date:  2004-09       Impact factor: 13.807

3.  Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes.

Authors:  A Maxwell Burroughs; Karen N Allen; Debra Dunaway-Mariano; L Aravind
Journal:  J Mol Biol       Date:  2006-07-07       Impact factor: 5.469

Review 4.  Evolution of enzyme superfamilies.

Authors:  Margaret E Glasner; John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2006-08-28       Impact factor: 8.822

5.  Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.

Authors:  Y F Li; Y Hata; T Fujii; T Hisano; M Nishihara; T Kurihara; N Esaki
Journal:  J Biol Chem       Date:  1998-06-12       Impact factor: 5.157

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search.

Authors:  E V Koonin; R L Tatusov
Journal:  J Mol Biol       Date:  1994-11-18       Impact factor: 5.469

8.  Three-dimensional structure of L-2-haloacid dehalogenase from Xanthobacter autotrophicus GJ10 complexed with the substrate-analogue formate.

Authors:  I S Ridder; H J Rozeboom; K H Kalk; D B Janssen; B W Dijkstra
Journal:  J Biol Chem       Date:  1997-12-26       Impact factor: 5.157

9.  Crystal structures of intermediates in the dehalogenation of haloalkanoates by L-2-haloacid dehalogenase.

Authors:  I S Ridder; H J Rozeboom; K H Kalk; B W Dijkstra
Journal:  J Biol Chem       Date:  1999-10-22       Impact factor: 5.157

10.  Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold.

Authors:  T Hisano; Y Hata; T Fujii; J Q Liu; T Kurihara; N Esaki; K Soda
Journal:  J Biol Chem       Date:  1996-08-23       Impact factor: 5.157

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