Literature DB >> 18083873

Enzymic approach to eurythermalism of Alvinella pompejana and its episymbionts.

Charles K Lee1, S Craig Cary, Alison E Murray, Roy M Daniel.   

Abstract

The equilibrium model, which describes the influence of temperature on enzyme activity, has been established as a valid and useful tool for characterizing enzyme eurythermalism and thermophily. By introducing K(eq), a temperature-dependent equilibrium constant for the interconversion between E(act), the active form of enzyme, and E(inact), a reversibly inactive form of enzyme, the equilibrium model currently provides the most complete description of the enzyme-temperature relationship; its derived parameters are intrinsic and apparently universal and, being derived under reaction conditions, potentially have physiological significance. One of these parameters, T(eq), correlates with host growth temperature better than enzyme stability does. The vent-dwelling annelid Alvinella pompejana has been reported as an extremely eurythermal organism, and the symbiotic complex microbial community associated with its dorsal surface is likely to experience similar environmental thermal conditions. The A. pompejana episymbiont community, predominantly composed of epsilonproteobacteria, has been analyzed metagenomically, enabling direct retrieval of genes coding for enzymes suitable for equilibrium model applications. Two such genes, coding for isopropylmalate dehydrogenase and glutamate dehydrogenase, have been isolated from the A. pompejana episymbionts, heterologously expressed, and shown by reverse transcription-quantitative PCR to be actively expressed. The equilibrium model parameters of characterized expression products suggested that enzyme eurythermalism constitutes part of the thermal adaptation strategy employed by the episymbionts. Moreover, the enzymes' thermal characteristics correspond to their predicted physiological roles and the abundance and expression of the corresponding genes. This paper demonstrates the use of the equilibrium model as part of a top-down metagenomic approach to studying temperature adaptation of uncultured organisms.

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Year:  2007        PMID: 18083873      PMCID: PMC2227733          DOI: 10.1128/AEM.01960-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  27 in total

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2.  Identification of thermophilic species by the amino acid compositions deduced from their genomes.

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Review 4.  Some like it cold: biocatalysis at low temperatures.

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Journal:  FEMS Microbiol Rev       Date:  2004-02       Impact factor: 16.408

5.  The dependence of enzyme activity on temperature: determination and validation of parameters.

Authors:  Michelle E Peterson; Roy M Daniel; Michael J Danson; Robert Eisenthal
Journal:  Biochem J       Date:  2007-03-01       Impact factor: 3.857

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8.  Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana.

Authors:  A Haddad; F Camacho; P Durand; S C Cary
Journal:  Appl Environ Microbiol       Date:  1995-05       Impact factor: 4.792

9.  Community proteomics of a natural microbial biofilm.

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10.  Linking biogeography to physiology: Evolutionary and acclimatory adjustments of thermal limits.

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  2 in total

1.  Metagenome analysis of an extreme microbial symbiosis reveals eurythermal adaptation and metabolic flexibility.

Authors:  Joseph J Grzymski; Alison E Murray; Barbara J Campbell; Mihailo Kaplarevic; Guang R Gao; Charles Lee; Roy Daniel; Amir Ghadiri; Robert A Feldman; Stephen C Cary
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-05       Impact factor: 11.205

2.  Thermal limit for metazoan life in question: in vivo heat tolerance of the Pompeii worm.

Authors:  Juliette Ravaux; Gérard Hamel; Magali Zbinden; Aurélie A Tasiemski; Isabelle Boutet; Nelly Léger; Arnaud Tanguy; Didier Jollivet; Bruce Shillito
Journal:  PLoS One       Date:  2013-05-29       Impact factor: 3.240

  2 in total

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