Literature DB >> 18078798

Taking aim at shotgun phosphoproteomics.

Jason D Hoffert1, Mark A Knepper.   

Abstract

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Year:  2007        PMID： 18078798      PMCID： PMC2408551          DOI： 10.1016/j.ab.2007.11.023

Source DB:  PubMed          Journal:  Anal Biochem        ISSN： 0003-2697            Impact factor:   3.365


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  55 in total

1.  Protein identification by spectral networks analysis.

Authors:  Nuno Bandeira; Dekel Tsur; Ari Frank; Pavel A Pevzner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-02       Impact factor: 11.205

2.  An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.

Authors:  Bernd Bodenmiller; Lukas N Mueller; Patrick G A Pedrioli; Delphine Pflieger; Martin A Jünger; Jimmy K Eng; Ruedi Aebersold; W Andy Tao
Journal:  Mol Biosyst       Date:  2007-02-19

3.  Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer.

Authors:  Graeme C McAlister; Doug Phanstiel; David M Good; W Travis Berggren; Joshua J Coon
Journal:  Anal Chem       Date:  2007-04-19       Impact factor: 6.986

4.  Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy.

Authors:  Brian M Balgley; Tom Laudeman; Li Yang; Tao Song; Cheng S Lee
Journal:  Mol Cell Proteomics       Date:  2007-05-28       Impact factor: 5.911

5.  Investigating MS2/MS3 matching statistics: a model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence.

Authors:  Peter J Ulintz; Bernd Bodenmiller; Philip C Andrews; Ruedi Aebersold; Alexey I Nesvizhskii
Journal:  Mol Cell Proteomics       Date:  2007-09-13       Impact factor: 5.911

6.  The effects of mass accuracy, data acquisition speed, and search algorithm choice on peptide identification rates in phosphoproteomics.

Authors:  Corey E Bakalarski; Wilhelm Haas; Noah E Dephoure; Steven P Gygi
Journal:  Anal Bioanal Chem       Date:  2007-09-14       Impact factor: 4.142

7.  The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis.

Authors:  Boris Macek; Ivan Mijakovic; Jesper V Olsen; Florian Gnad; Chanchal Kumar; Peter R Jensen; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2007-01-10       Impact factor: 5.911

8.  Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.

Authors:  Xue Li; Scott A Gerber; Adam D Rudner; Sean A Beausoleil; Wilhelm Haas; Judit Villén; Joshua E Elias; Steve P Gygi
Journal:  J Proteome Res       Date:  2007-03       Impact factor: 4.466

9.  Neutral loss-based phosphopeptide recognition: a collection of caveats.

Authors:  Wolf D Lehmann; Ralf Krüger; Mogjiborahman Salek; Chien-Wen Hung; Florian Wolschin; Wolfram Weckwerth
Journal:  J Proteome Res       Date:  2007-06-15       Impact factor: 4.466

10.  An automated platform for analysis of phosphoproteomic datasets: application to kidney collecting duct phosphoproteins.

Authors:  Jason D Hoffert; Guanghui Wang; Trairak Pisitkun; Rong-Fong Shen; Mark A Knepper
Journal:  J Proteome Res       Date:  2007-08-07       Impact factor: 4.466
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  16 in total

1.  Discovery of phosphorylation motif mixtures in phosphoproteomics data.

Authors:  Anna Ritz; Gregory Shakhnarovich; Arthur R Salomon; Benjamin J Raphael
Journal:  Bioinformatics       Date:  2008-11-07       Impact factor: 6.937

Review 2.  Systems biology in physiology: the vasopressin signaling network in kidney.

Authors:  Mark A Knepper
Journal:  Am J Physiol Cell Physiol       Date:  2012-08-29       Impact factor: 4.249

3.  Large-scale phosphoproteomic analysis of membrane proteins in renal proximal and distal tubule.

Authors:  Marina Feric; Boyang Zhao; Jason D Hoffert; Trairak Pisitkun; Mark A Knepper
Journal:  Am J Physiol Cell Physiol       Date:  2011-01-05       Impact factor: 4.249

4.  Global analysis of the effects of the V2 receptor antagonist satavaptan on protein phosphorylation in collecting duct.

Authors:  Jason D Hoffert; Trairak Pisitkun; Fahad Saeed; Justin L Wilson; Mark A Knepper
Journal:  Am J Physiol Renal Physiol       Date:  2013-11-20

Review 5.  Phosphoproteomics of vasopressin signaling in the kidney.

Authors:  Jason D Hoffert; Trairak Pisitkun; Mark A Knepper
Journal:  Expert Rev Proteomics       Date:  2011-04       Impact factor: 3.940

6.  Comparison of MS(2)-only, MSA, and MS(2)/MS(3) methodologies for phosphopeptide identification.

Authors:  Peter J Ulintz; Anastasia K Yocum; Bernd Bodenmiller; Ruedi Aebersold; Philip C Andrews; Alexey I Nesvizhskii
Journal:  J Proteome Res       Date:  2009-02       Impact factor: 4.466

7.  Characterization of the Phosphoproteome in SLE Patients.

Authors:  Xinzhou Zhang; Hualin Ma; Jianrong Huang; Yong Dai
Journal:  PLoS One       Date:  2012-12-28       Impact factor: 3.240

8.  An extensive survey of tyrosine phosphorylation revealing new sites in human mammary epithelial cells.

Authors:  Tyler H Heibeck; Shi-Jian Ding; Lee K Opresko; Rui Zhao; Athena A Schepmoes; Feng Yang; Aleksey V Tolmachev; Matthew E Monroe; David G Camp; Richard D Smith; H Steven Wiley; Wei-Jun Qian
Journal:  J Proteome Res       Date:  2009-08       Impact factor: 4.466

Review 9.  Phosphoproteomics for the masses.

Authors:  Paul A Grimsrud; Danielle L Swaney; Craig D Wenger; Nicole A Beauchene; Joshua J Coon
Journal:  ACS Chem Biol       Date:  2010-01-15       Impact factor: 5.100

10.  Mechanistic investigation of phosphate ester bond cleavages of glycylphosphoserinyltryptophan radical cations under low-energy collision-induced dissociation.

Authors:  Quan Quan; Qiang Hao; Tao Song; Chi-Kit Siu; Ivan K Chu
Journal:  J Am Soc Mass Spectrom       Date:  2013-03-21       Impact factor: 3.109
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