Literature DB >> 18077381

Dynamic Stokes shift in green fluorescent protein variants.

Paul Abbyad1, William Childs, Xinghua Shi, Steven G Boxer.   

Abstract

Solvent reorganization around the excited state of a chromophore leads to an emission shift to longer wavelengths during the excited-state lifetime. This solvation response is absent in wild-type green fluorescent protein, and this has been attributed to rigidity in the chromophore's environment necessary to exclude nonradiative transitions to the ground state. The fluorescent protein mPlum was developed via directed evolution by selection for red emission, and we use time-resolved fluorescence to study the dynamic Stokes shift through its evolutionary history. The far-red emission of mPlum is attributed to a picosecond solvation response that is observed at all temperatures above the glass transition. This time-dependent shift in emission is not observed in its evolutionary ancestors, suggesting that selective pressure has produced a chromophore environment that allows solvent reorganization. The evolutionary pathway and structures of related fluorescent proteins suggest the role of a single residue in close proximity to the chromophore as the primary cause of the solvation response.

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Year:  2007        PMID: 18077381      PMCID: PMC2154406          DOI: 10.1073/pnas.0706185104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  One- and two-photon excited fluorescence lifetimes and anisotropy decays of green fluorescent proteins.

Authors:  A Volkmer; V Subramaniam; D J Birch; T M Jovin
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

2.  Probing protein electrostatics with a synthetic fluorescent amino acid.

Authors:  Bruce E Cohen; Tim B McAnaney; Eun Sun Park; Yuh Nung Jan; Steven G Boxer; Lily Yeh Jan
Journal:  Science       Date:  2002-05-31       Impact factor: 47.728

3.  A monomeric red fluorescent protein.

Authors:  Robert E Campbell; Oded Tour; Amy E Palmer; Paul A Steinbach; Geoffrey S Baird; David A Zacharias; Roger Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

4.  Enhancement of the fluorescence of the blue fluorescent proteins by high pressure or low temperature.

Authors:  Koit Mauring; Jason Deich; Federico I Rosell; Tim B McAnaney; W E Moerner; Steven G Boxer
Journal:  J Phys Chem B       Date:  2005-07-07       Impact factor: 2.991

5.  Antibody evolution constrains conformational heterogeneity by tailoring protein dynamics.

Authors:  Jörg Zimmermann; Erin L Oakman; Ian F Thorpe; Xinghua Shi; Paul Abbyad; Charles L Brooks; Steven G Boxer; Floyd E Romesberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-05       Impact factor: 11.205

6.  Measurement of solvation responses at multiple sites in a globular protein.

Authors:  Paul Abbyad; Xinghua Shi; William Childs; Tim B McAnaney; Bruce E Cohen; Steven G Boxer
Journal:  J Phys Chem B       Date:  2007-06-26       Impact factor: 2.991

7.  Novel chromophores and buried charges control color in mFruits.

Authors:  Xiaokun Shu; Nathan C Shaner; Corinne A Yarbrough; Roger Y Tsien; S James Remington
Journal:  Biochemistry       Date:  2006-08-15       Impact factor: 3.162

8.  Solvatochromism of the green fluorescence protein chromophore and its derivatives.

Authors:  Jian Dong; Kyril M Solntsev; Laren M Tolbert
Journal:  J Am Chem Soc       Date:  2006-09-20       Impact factor: 15.419

9.  Temperature dependence of solvation dynamics and anisotropy decay in a protein: ANS in bovine serum albumin.

Authors:  Kalyanasis Sahu; Sudip Kumar Mondal; Subhadip Ghosh; Durba Roy; Kankan Bhattacharyya
Journal:  J Chem Phys       Date:  2006-03-28       Impact factor: 3.488

10.  Hydration at the surface of the protein Monellin: dynamics with femtosecond resolution.

Authors:  Jorge Peon; Samir Kumar Pal; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

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  29 in total

Review 1.  Dynamics and mechanisms of DNA repair by photolyase.

Authors:  Zheyun Liu; Lijuan Wang; Dongping Zhong
Journal:  Phys Chem Chem Phys       Date:  2015-05-14       Impact factor: 3.676

2.  Ultrafast solvation dynamics at binding and active sites of photolyases.

Authors:  Chih-Wei Chang; Lijun Guo; Ya-Ting Kao; Jiang Li; Chuang Tan; Tanping Li; Chaitanya Saxena; Zheyun Liu; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

3.  Analysis of red-fluorescent proteins provides insight into dark-state conversion and photodegradation.

Authors:  Kevin M Dean; Jennifer L Lubbeck; Jennifer K Binder; Linda R Schwall; Ralph Jimenez; Amy E Palmer
Journal:  Biophys J       Date:  2011-08-17       Impact factor: 4.033

4.  Microfluidic flow cytometer for quantifying photobleaching of fluorescent proteins in cells.

Authors:  Jennifer L Lubbeck; Kevin M Dean; Hairong Ma; Amy E Palmer; Ralph Jimenez
Journal:  Anal Chem       Date:  2012-04-09       Impact factor: 6.986

5.  Energetics and dynamics of proton transfer reactions along short water wires.

Authors:  Ville R I Kaila; Gerhard Hummer
Journal:  Phys Chem Chem Phys       Date:  2011-06-23       Impact factor: 3.676

6.  The structure of a far-red fluorescent protein, AQ143, shows evidence in support of reported red-shifting chromophore interactions.

Authors:  Timothy M Wannier; Stephen L Mayo
Journal:  Protein Sci       Date:  2014-06-14       Impact factor: 6.725

7.  Color hues in red fluorescent proteins are due to internal quadratic Stark effect.

Authors:  Mikhail Drobizhev; Shane Tillo; Nikolay S Makarov; Thomas E Hughes; Aleksander Rebane
Journal:  J Phys Chem B       Date:  2009-10-01       Impact factor: 2.991

8.  Improved orange and red Ca²± indicators and photophysical considerations for optogenetic applications.

Authors:  Jiahui Wu; Lin Liu; Tomoki Matsuda; Yongxin Zhao; Aleksander Rebane; Mikhail Drobizhev; Yu-Fen Chang; Satoko Araki; Yoshiyuki Arai; Kelsey March; Thomas E Hughes; Ken Sagou; Takaki Miyata; Takeharu Nagai; Wen-Hong Li; Robert E Campbell
Journal:  ACS Chem Neurosci       Date:  2013-03-19       Impact factor: 4.418

9.  Fluorescence from Multiple Chromophore Hydrogen-Bonding States in the Far-Red Protein TagRFP675.

Authors:  Patrick E Konold; Eunjin Yoon; Junghwa Lee; Samantha L Allen; Prem P Chapagain; Bernard S Gerstman; Chola K Regmi; Kiryl D Piatkevich; Vladislav V Verkhusha; Taiha Joo; Ralph Jimenez
Journal:  J Phys Chem Lett       Date:  2016-07-27       Impact factor: 6.475

10.  Validation of response function construction and probing heterogeneous protein hydration by intrinsic tryptophan.

Authors:  Yangzhong Qin; Chih-Wei Chang; Lijuan Wang; Dongping Zhong
Journal:  J Phys Chem B       Date:  2012-11-02       Impact factor: 2.991

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