Literature DB >> 18074004

5S rRNA: Structure and Function from Head to Toe.

Jonathan D Dinman1.   

Abstract

5S rRNA is uniquely positioned so as to link together all of the functional centers of the ribosome. Previous studies have supported the hypothesis that 5S rRNA acts as a physical transducer of information, facilitating communication between the different functional centers and coordinating of the multiple events catalyzed by the ribosome. Here, we present a synthesis of both structural and genetic information to construct a more detailed picture of how 5S rRNA may act to transmit and coordinate all of the functional centers of the ribosome.

Entities:  

Year:  2005        PMID: 18074004      PMCID: PMC2131706     

Source DB:  PubMed          Journal:  Int J Biomed Sci        ISSN: 1550-9702


  41 in total

1.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  High resolution structure of the large ribosomal subunit from a mesophilic eubacterium.

Authors:  J Harms; F Schluenzen; R Zarivach; A Bashan; S Gat; I Agmon; H Bartels; F Franceschi; A Yonath
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

3.  X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli.

Authors:  Antón Vila-Sanjurjo; William K Ridgeway; Veysel Seymaner; Wen Zhang; Steve Santoso; Kexin Yu; Jamie H Doudna Cate
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-09       Impact factor: 11.205

4.  Peptidyl-tRNA regulates the GTPase activity of translation factors.

Authors:  Andrey V Zavialov; Måns Ehrenberg
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

5.  Locking and unlocking of ribosomal motions.

Authors:  Mikel Valle; Andrey Zavialov; Jayati Sengupta; Urmila Rawat; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

6.  Stem-loop IV of 5S rRNA lies close to the peptidyltransferase center.

Authors:  O Dontsova; V Tishkov; S Dokudovskaya; A Bogdanov; T Döring; J Rinke-Appel; S Thamm; B Greuer; R Brimacombe
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-10       Impact factor: 11.205

7.  The environment of 5S rRNA in the ribosome: cross-links to the GTPase-associated area of 23S rRNA.

Authors:  P Sergiev; S Dokudovskaya; E Romanova; A Topin; A Bogdanov; R Brimacombe; O Dontsova
Journal:  Nucleic Acids Res       Date:  1998-06-01       Impact factor: 16.971

8.  Crystal structure of domain A of Thermus flavus 5S rRNA and the contribution of water molecules to its structure.

Authors:  C Betzel; S Lorenz; J P Fürste; R Bald; M Zhang; T R Schneider; K S Wilson; V A Erdmann
Journal:  FEBS Lett       Date:  1994-09-05       Impact factor: 4.124

9.  Mutations at position A960 of E. coli 23 S ribosomal RNA influence the structure of 5 S ribosomal RNA and the peptidyltransferase region of 23 S ribosomal RNA.

Authors:  P V Sergiev; A A Bogdanov; A E Dahlberg; O Dontsova
Journal:  J Mol Biol       Date:  2000-06-02       Impact factor: 5.469

10.  Study of the structural dynamics of the E coli 70S ribosome using real-space refinement.

Authors:  Haixiao Gao; Jayati Sengupta; Mikel Valle; Andrei Korostelev; Narayanan Eswar; Scott M Stagg; Patrick Van Roey; Rajendra K Agrawal; Stephen C Harvey; Andrej Sali; Michael S Chapman; Joachim Frank
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

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  12 in total

1.  Phenotypic and functional alterations on inflammatory peripheral blood cells after acute myocardial infarction.

Authors:  Tiago Carvalheiro; Isabel Velada; Ana Valado; Fernando Mendes; António Martinho; Natália António; Lino Gonçalves; Luís Providência; Maria Luísa Pais; Artur Paiva
Journal:  J Cardiovasc Transl Res       Date:  2012-04-21       Impact factor: 4.132

Review 2.  Eukaryotic 5S rRNA biogenesis.

Authors:  Martin Ciganda; Noreen Williams
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-02-25       Impact factor: 9.957

3.  Formation of mammalian preribosomes proceeds from intermediate to composed state during ribosome maturation.

Authors:  Danysh A Abetov; Vladimir S Kiyan; Assylbek A Zhylkibayev; Dilara A Sarbassova; Sanzhar D Alybayev; Eric Spooner; Min Sup Song; Rakhmetkazhy I Bersimbaev; Dos D Sarbassov
Journal:  J Biol Chem       Date:  2019-05-10       Impact factor: 5.157

4.  An extensive network of information flow through the B1b/c intersubunit bridge of the yeast ribosome.

Authors:  Michael H J Rhodin; Jonathan D Dinman
Journal:  PLoS One       Date:  2011-05-19       Impact factor: 3.240

5.  A flexible loop in yeast ribosomal protein L11 coordinates P-site tRNA binding.

Authors:  Michael H J Rhodin; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2010-08-12       Impact factor: 16.971

6.  Ribosome RNA Profiling to Quantify Ovarian Development and Identify Sex in Fish.

Authors:  Zhi-Gang Shen; Hong Yao; Liang Guo; Xiao-Xia Li; Han-Ping Wang
Journal:  Sci Rep       Date:  2017-06-23       Impact factor: 4.379

7.  Linking maternal and somatic 5S rRNA types with different sequence-specific non-LTR retrotransposons.

Authors:  Mauro D Locati; Johanna F B Pagano; Wim A Ensink; Marina van Olst; Selina van Leeuwen; Ulrike Nehrdich; Kongju Zhu; Herman P Spaink; Geneviève Girard; Han Rauwerda; Martijs J Jonker; Rob J Dekker; Timo M Breit
Journal:  RNA       Date:  2016-12-21       Impact factor: 4.942

8.  rRNA mutants in the yeast peptidyltransferase center reveal allosteric information networks and mechanisms of drug resistance.

Authors:  Rasa Rakauskaite; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2008-01-18       Impact factor: 16.971

9.  Yeast ribosomal protein L10 helps coordinate tRNA movement through the large subunit.

Authors:  Alexey N Petrov; Arturas Meskauskas; Sara C Roshwalb; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2008-09-29       Impact factor: 16.971

10.  Structural insights into species-specific features of the ribosome from the human pathogen Mycobacterium tuberculosis.

Authors:  Kailu Yang; Jeng-Yih Chang; Zhicheng Cui; Xiaojun Li; Ran Meng; Lijun Duan; Jirapat Thongchol; Joanita Jakana; Christoph M Huwe; James C Sacchettini; Junjie Zhang
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971

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