Literature DB >> 18071578

Fundulus as the premier teleost model in environmental biology: opportunities for new insights using genomics.

Karen G Burnett1, Lisa J Bain, William S Baldwin, Gloria V Callard, Sarah Cohen, Richard T Di Giulio, David H Evans, Marta Gómez-Chiarri, Mark E Hahn, Cindi A Hoover, Sibel I Karchner, Fumi Katoh, Deborah L Maclatchy, William S Marshall, Joel N Meyer, Diane E Nacci, Marjorie F Oleksiak, Bernard B Rees, Thomas D Singer, John J Stegeman, David W Towle, Peter A Van Veld, Wolfgang K Vogelbein, Andrew Whitehead, Richard N Winn, Douglas L Crawford.   

Abstract

A strong foundation of basic and applied research documents that the estuarine fish Fundulus heteroclitus and related species are unique laboratory and field models for understanding how individuals and populations interact with their environment. In this paper we summarize an extensive body of work examining the adaptive responses of Fundulus species to environmental conditions, and describe how this research has contributed importantly to our understanding of physiology, gene regulation, toxicology, and ecological and evolutionary genetics of teleosts and other vertebrates. These explorations have reached a critical juncture at which advancement is hindered by the lack of genomic resources for these species. We suggest that a more complete genomics toolbox for F. heteroclitus and related species will permit researchers to exploit the power of this model organism to rapidly advance our understanding of fundamental biological and pathological mechanisms among vertebrates, as well as ecological strategies and evolutionary processes common to all living organisms.

Entities:  

Keywords:  Fundulus heteroclitus; ecological genomics; environmental genomics; evolutionary genomics; physiological genomics; toxicogenomics

Year:  2007        PMID: 18071578      PMCID: PMC2128618          DOI: 10.1016/j.cbd.2007.09.001

Source DB:  PubMed          Journal:  Comp Biochem Physiol Part D Genomics Proteomics        ISSN: 1744-117X            Impact factor:   2.674


  265 in total

1.  Evolution of gene expression in the Drosophila melanogaster subgroup.

Authors:  Scott A Rifkin; Junhyong Kim; Kevin P White
Journal:  Nat Genet       Date:  2003-01-27       Impact factor: 38.330

2.  Natural variation in cardiac metabolism and gene expression in Fundulus heteroclitus.

Authors:  Marjorie F Oleksiak; Jennifer L Roach; Douglas L Crawford
Journal:  Nat Genet       Date:  2004-11-28       Impact factor: 38.330

Review 3.  The multifunctional fish gill: dominant site of gas exchange, osmoregulation, acid-base regulation, and excretion of nitrogenous waste.

Authors:  David H Evans; Peter M Piermarini; Keith P Choe
Journal:  Physiol Rev       Date:  2005-01       Impact factor: 37.312

4.  Hypercapnic hypoxia compromises bactericidal activity of fish anterior kidney cells against opportunistic environmental pathogens.

Authors:  K A Boleza; L E Burnett; K G Burnett
Journal:  Fish Shellfish Immunol       Date:  2001-10       Impact factor: 4.581

Review 5.  Oxygen-dependent gene expression in fishes.

Authors:  Mikko Nikinmaa; Bernard B Rees
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2005-05       Impact factor: 3.619

6.  Glutathione S-transferase in intestine, liver and hepatic lesions of mummichog (Fundulus heteroclitus) from a creosote-contaminated environment.

Authors:  P A Van Veld; U Ko; W K Vogelbein; D J Westbrook
Journal:  Fish Physiol Biochem       Date:  1991-12       Impact factor: 2.794

7.  Oocyte maturation in the mummichog (Fundulus heteroclitus): effects of steroids on germinal vesicle breakdown of intact follicles in vitro.

Authors:  M S Greeley; D R Calder; M H Taylor; H Hols; R A Wallace
Journal:  Gen Comp Endocrinol       Date:  1986-05       Impact factor: 2.822

8.  Cytochrome P4501A (CYP1A) in killifish (Fundulus heteroclitus): heritability of altered expression and relationship to survival in contaminated sediments.

Authors:  Joel N Meyer; Diane E Nacci; Richard T Di Giulio
Journal:  Toxicol Sci       Date:  2002-07       Impact factor: 4.849

9.  Effects of methylmercury on sperm and egg viability of two populations of killifish (Fundulus heteroclitus).

Authors:  A T Khan; J S Weis
Journal:  Arch Environ Contam Toxicol       Date:  1987-07       Impact factor: 2.804

10.  FINE STRUCTURE OF CHLORIDE CELLS FROM THREE SPECIES OF FUNDULUS.

Authors:  C W PHILPOTT; D E COPELAND
Journal:  J Cell Biol       Date:  1963-08       Impact factor: 10.539

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  86 in total

1.  Mechanisms of Ca2+ uptake in freshwater and seawater-acclimated killifish, Fundulus heteroclitus, and their response to acute salinity transfer.

Authors:  Alex M Zimmer; Kevin V Brix; Chris M Wood
Journal:  J Comp Physiol B       Date:  2018-12-04       Impact factor: 2.200

2.  Genomic approaches with natural fish populations from polluted environments.

Authors:  Goran Bozinovic; Marjorie F Oleksiak
Journal:  Environ Toxicol Chem       Date:  2011-02       Impact factor: 3.742

Review 3.  Functional genomics to assess biological responses to marine pollution at physiological and evolutionary timescales: toward a vision of predictive ecotoxicology.

Authors:  Noah M Reid; Andrew Whitehead
Journal:  Brief Funct Genomics       Date:  2015-12-22       Impact factor: 4.241

4.  Analysis of tissue proteomes of the Gulf killifish, Fundulus grandis, by 2D electrophoresis and MALDI-TOF/TOF mass spectrometry.

Authors:  Naga V Abbaraju; Mohamed Nazim Boutaghou; Ian K Townley; Qiang Zhang; Guangdi Wang; Richard B Cole; Bernard B Rees
Journal:  Integr Comp Biol       Date:  2012-04-25       Impact factor: 3.326

Review 5.  Current status of sperm cryopreservation in biomedical research fish models: zebrafish, medaka, and Xiphophorus.

Authors:  Huiping Yang; Terrence R Tiersch
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2008-07-18       Impact factor: 3.228

6.  Genome-wide scan reveals signatures of selection related to pollution adaptation in non-model estuarine Atlantic killifish (Fundulus heteroclitus).

Authors:  J S Osterberg; K M Cammen; T F Schultz; B W Clark; R T Di Giulio
Journal:  Aquat Toxicol       Date:  2018-04-25       Impact factor: 4.964

7.  A novel variant of aquaporin 3 is expressed in killifish (Fundulus heteroclitus) intestine.

Authors:  Dawoon Jung; Meredith A Adamo; Rebecca M Lehman; Roxanna Barnaby; Craig E Jackson; Brian P Jackson; Joseph R Shaw; Bruce A Stanton
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2015-03-09       Impact factor: 3.228

8.  Targeted mutagenesis of aryl hydrocarbon receptor 2a and 2b genes in Atlantic killifish (Fundulus heteroclitus).

Authors:  Neelakanteswar Aluru; Sibel I Karchner; Diana G Franks; Diane Nacci; Denise Champlin; Mark E Hahn
Journal:  Aquat Toxicol       Date:  2014-11-26       Impact factor: 4.964

9.  Exploration of the mechanisms of protein quality control and osmoregulation in gills of Chromis viridis in response to reduced salinity.

Authors:  Cheng-Hao Tang; Ming-Yih Leu; Wen-Kai Yang; Shu-Chuan Tsai
Journal:  Fish Physiol Biochem       Date:  2014-05-08       Impact factor: 2.794

10.  New cytochrome P450 1B1, 1C2 and 1D1 genes in the killifish Fundulus heteroclitus: Basal expression and response of five killifish CYP1s to the AHR agonist PCB126.

Authors:  Juliano Zanette; Matthew J Jenny; Jared V Goldstone; Bruce R Woodin; Lauren A Watka; Afonso C D Bainy; John J Stegeman
Journal:  Aquat Toxicol       Date:  2009-05-15       Impact factor: 4.964

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