Literature DB >> 18061843

Metabolomics as an extension of proteomic analysis: study of acute kidney injury.

Didier Portilla1, Laura Schnackenberg, Richard D Beger.   

Abstract

Although proteomics studies the global expression of proteins, metabolomics characterizes and quantifies their end products: the metabolites, produced by an organism under a certain set of conditions. From this perspective it is apparent that proteomics and metabolomics are complementary and when joined allow a fuller appreciation of an organism's phenotype. Our studies using (1)H-nuclear magnetic resonance spectroscopic analysis showed the presence of glucose, amino acids, and trichloroacetic acid cycle metabolites in the urine after 48 hours of cisplatin administration. These metabolic alterations precede changes in serum creatinine. Biochemical studies confirmed the presence of glucosuria, but also showed the accumulation of nonesterified fatty acids, and triglycerides in serum, urine, and kidney tissue, despite increased levels of plasma insulin. These metabolic alterations were ameliorated by the use of fibrates. We propose that the injury-induced metabolic profile may be used as a biomarker of cisplatin-induced nephrotoxicity. These studies serve to illustrate that metabolomic studies add insight into pathophysiology not provided by proteomic analysis alone.

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Year:  2007        PMID: 18061843      PMCID: PMC2684501          DOI: 10.1016/j.semnephrol.2007.09.006

Source DB:  PubMed          Journal:  Semin Nephrol        ISSN: 0270-9295            Impact factor:   5.299


  31 in total

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Review 3.  Mechanistic biomarkers for cytotoxic acute kidney injury.

Authors:  Vishal S Vaidya; Joseph V Bonventre
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4.  Cisplatin-induced nephrotoxicity is associated with oxidative stress, redox state unbalance, impairment of energetic metabolism and apoptosis in rat kidney mitochondria.

Authors:  N A G Santos; C S Catão; N M Martins; C Curti; M L P Bianchi; A C Santos
Journal:  Arch Toxicol       Date:  2007-01-11       Impact factor: 5.153

5.  Investigation of the role of hyperbaric oxygen therapy in cisplatin-induced nephrotoxicity in rats.

Authors:  Enes Murat Atasoyu; Senol Yildiz; Oguz Bilgi; Hakan Cermik; Rifki Evrenkaya; Samil Aktas; Mustafa Gültepe; E Gökhan Kandemir
Journal:  Arch Toxicol       Date:  2004-11-09       Impact factor: 5.153

6.  Metabolomic study of cisplatin-induced nephrotoxicity.

Authors:  D Portilla; S Li; K K Nagothu; J Megyesi; B Kaissling; L Schnackenberg; R L Safirstein; R D Beger
Journal:  Kidney Int       Date:  2006-05-03       Impact factor: 10.612

7.  Fibrate prevents cisplatin-induced proximal tubule cell death.

Authors:  Kiran K Nagothu; Renu Bhatt; Gur P Kaushal; Didier Portilla
Journal:  Kidney Int       Date:  2005-12       Impact factor: 10.612

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Authors:  Laura K Schnackenberg; Richard C Jones; Sheeno Thyparambil; Jason T Taylor; Tao Han; Weida Tong; Deborah K Hansen; James C Fuscoe; Ricky D Edmondson; Richard D Beger; Yvonne P Dragan
Journal:  OMICS       Date:  2006

9.  Metabonomics with 1H-NMR spectroscopy and liquid chromatography-mass spectrometry applied to the investigation of metabolic changes caused by gentamicin-induced nephrotoxicity in the rat.

Authors:  E M Lenz; J Bright; R Knight; F R Westwood; D Davies; H Major; I D Wilson
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Journal:  Am J Physiol Renal Physiol       Date:  2003-11-11
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Review 2.  A basic science view of acute kidney injury biomarkers.

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3.  Early lipid changes in acute kidney injury using SWATH lipidomics coupled with MALDI tissue imaging.

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5.  Metabolomics as a tool to evaluate the toxicity of formulations containing amphotericin B, an antileishmanial drug.

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7.  Identification of agents that reduce renal hypoxia-reoxygenation injury using cell-based screening: purine nucleosides are alternative energy sources in LLC-PK1 cells during hypoxia.

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Review 8.  The primary glomerulonephritides: a systems biology approach.

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9.  Plasma metabolomic profiles in different stages of CKD.

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Review 10.  Biomarkers for renal disease in childhood.

Authors:  Lena Das; Hermine I Brunner
Journal:  Curr Rheumatol Rep       Date:  2009-07       Impact factor: 4.592

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