Literature DB >> 18056866

Toward sequencing cotton (Gossypium) genomes.

Z Jeffrey Chen, Brian E Scheffler, Elizabeth Dennis, Barbara A Triplett, Tianzhen Zhang, Wangzhen Guo, Xiaoya Chen, David M Stelly, Pablo D Rabinowicz, Christopher D Town, Tony Arioli, Curt Brubaker, Roy G Cantrell, Jean-Marc Lacape, Mauricio Ulloa, Peng Chee, Alan R Gingle, Candace H Haigler, Richard Percy, Sukumar Saha, Thea Wilkins, Robert J Wright, Allen Van Deynze, Yuxian Zhu, Shuxun Yu, Ibrokhim Abdurakhmonov, Ishwarappa Katageri, P Ananda Kumar, Yusuf Zafar, John Z Yu, Russell J Kohel, Jonathan F Wendel, Andrew H Paterson.   

Abstract

Mesh：

Year:  2007        PMID： 18056866      PMCID： PMC2151711          DOI： 10.1104/pp.107.107672

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


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  40 in total

Review 1.  Cotton fiber growth in planta and in vitro. Models for plant cell elongation and cell wall biogenesis.

Authors:  H J Kim; B A Triplett
Journal:  Plant Physiol       Date:  2001-12       Impact factor: 8.340

2.  Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers.

Authors:  T-B Nguyen; M Giband; P Brottier; A-M Risterucci; J-M Lacape
Journal:  Theor Appl Genet       Date:  2004-03-02       Impact factor: 5.699

3.  A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium.

Authors:  Wangzhen Guo; Caiping Cai; Changbiao Wang; Zhiguo Han; Xianliang Song; Kai Wang; Xiaowei Niu; Cheng Wang; Keyu Lu; Ben Shi; Tianzhen Zhang
Journal:  Genetics       Date:  2007-04-03       Impact factor: 4.562

Review 4.  Leafing through the genomes of our major crop plants: strategies for capturing unique information.

Authors:  Andrew H Paterson
Journal:  Nat Rev Genet       Date:  2006-03       Impact factor: 53.242

5.  Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton.

Authors:  X P Zhao; Y Si; R E Hanson; C F Crane; H J Price; D M Stelly; J F Wendel; A H Paterson
Journal:  Genome Res       Date:  1998-05       Impact factor: 9.043

6.  Polyploid formation created unique avenues for response to selection in Gossypium (cotton).

Authors:  C Jiang; R J Wright; K M El-Zik; A H Paterson
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

7.  Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton.

Authors:  S Samuel Yang; Foo Cheung; Jinsuk J Lee; Misook Ha; Ning E Wei; Sing-Hoi Sze; David M Stelly; Peggy Thaxton; Barbara Triplett; Christopher D Town; Z Jeffrey Chen
Journal:  Plant J       Date:  2006-08-02       Impact factor: 6.417

8.  Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation.

Authors:  Yong-Hui Shi; Sheng-Wei Zhu; Xi-Zeng Mao; Jian-Xun Feng; Yong-Mei Qin; Liang Zhang; Jing Cheng; Li-Ping Wei; Zhi-Yong Wang; Yu-Xian Zhu
Journal:  Plant Cell       Date:  2006-02-03       Impact factor: 11.277

9.  A global assembly of cotton ESTs.

Authors:  Joshua A Udall; Jordan M Swanson; Karl Haller; Ryan A Rapp; Michael E Sparks; Jamie Hatfield; Yeisoo Yu; Yingru Wu; Caitriona Dowd; Aladdin B Arpat; Brad A Sickler; Thea A Wilkins; Jin Ying Guo; Xiao Ya Chen; Jodi Scheffler; Earl Taliercio; Ricky Turley; Helen McFadden; Paxton Payton; Natalya Klueva; Randell Allen; Deshui Zhang; Candace Haigler; Curtis Wilkerson; Jinfeng Suo; Stefan R Schulze; Margaret L Pierce; Margaret Essenberg; Hyeran Kim; Danny J Llewellyn; Elizabeth S Dennis; David Kudrna; Rod Wing; Andrew H Paterson; Cari Soderlund; Jonathan F Wendel
Journal:  Genome Res       Date:  2006-02-14       Impact factor: 9.043

10.  Detection and mapping of homologous and homoeologous segments in homoeologous groups of allotetraploid cotton by BAC-FISH.

Authors:  Kai Wang; Wangzhen Guo; Tianzhen Zhang
Journal:  BMC Genomics       Date:  2007-06-19       Impact factor: 3.969
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  171 in total

1.  Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication.

Authors:  Maojun Wang; Lili Tu; Min Lin; Zhongxu Lin; Pengcheng Wang; Qingyong Yang; Zhengxiu Ye; Chao Shen; Jianying Li; Lin Zhang; Xiaolin Zhou; Xinhui Nie; Zhonghua Li; Kai Guo; Yizan Ma; Cong Huang; Shuangxia Jin; Longfu Zhu; Xiyan Yang; Ling Min; Daojun Yuan; Qinghua Zhang; Keith Lindsey; Xianlong Zhang
Journal:  Nat Genet       Date:  2017-03-06       Impact factor: 38.330

2.  Fine-mapping qFS07.1 controlling fiber strength in upland cotton (Gossypium hirsutum L.).

Authors:  Xiaomei Fang; Xueying Liu; Xiaoqin Wang; Wenwen Wang; Dexin Liu; Jian Zhang; Dajun Liu; Zhonghua Teng; Zhaoyun Tan; Fang Liu; Fengjiao Zhang; Maochao Jiang; Xiuling Jia; Jianwei Zhong; Jinghong Yang; Zhengsheng Zhang
Journal:  Theor Appl Genet       Date:  2017-01-31       Impact factor: 5.699

3.  A specialized outer layer of the primary cell wall joins elongating cotton fibers into tissue-like bundles.

Authors:  Bir Singh; Utku Avci; Sarah E Eichler Inwood; Mark J Grimson; Jeff Landgraf; Debra Mohnen; Iben Sørensen; Curtis G Wilkerson; William G T Willats; Candace H Haigler
Journal:  Plant Physiol       Date:  2009-04-15       Impact factor: 8.340

4.  Structure and size variations between 12A and 12D homoeologous chromosomes based on high-resolution cytogenetic map in allotetraploid cotton.

Authors:  Kai Wang; Wangzhen Guo; Zaijie Yang; Yan Hu; Wenpan Zhang; Baoliang Zhou; David M Stelly; Z Jeffrey Chen; Tianzhen Zhang
Journal:  Chromosoma       Date:  2010-02-02       Impact factor: 4.316

5.  Transcriptome-wide identification and stress properties of the 14-3-3 gene family in cotton (Gossypium hirsutum L.).

Authors:  Guiling Sun; Fuliang Xie; Baohong Zhang
Journal:  Funct Integr Genomics       Date:  2011-07-31       Impact factor: 3.410

6.  Enriching an intraspecific genetic map and identifying QTL for fiber quality and yield component traits across multiple environments in Upland cotton (Gossypium hirsutum L.).

Authors:  Xueying Liu; Zhonghua Teng; Jinxia Wang; Tiantian Wu; Zhiqin Zhang; Xianping Deng; Xiaomei Fang; Zhaoyun Tan; Iftikhar Ali; Dexin Liu; Jian Zhang; Dajun Liu; Fang Liu; Zhengsheng Zhang
Journal:  Mol Genet Genomics       Date:  2017-07-21       Impact factor: 3.291

Review 7.  Plant exomics: concepts, applications and methodologies in crop improvement.

Authors:  Uzair Hashmi; Samia Shafqat; Faria Khan; Misbah Majid; Harris Hussain; Alvina Gul Kazi; Riffat John; Parvaiz Ahmad
Journal:  Plant Signal Behav       Date:  2015

8.  Functional genomic analysis of cotton genes with agrobacterium-mediated virus-induced gene silencing.

Authors:  Xiquan Gao; Libo Shan
Journal:  Methods Mol Biol       Date:  2013

9.  Apyrase (nucleoside triphosphate-diphosphohydrolase) and extracellular nucleotides regulate cotton fiber elongation in cultured ovules.

Authors:  Greg Clark; Jonathan Torres; Scott Finlayson; Xueying Guan; Craig Handley; Jinsuk Lee; Julia E Kays; Z Jeffery Chen; Stanley J Roux
Journal:  Plant Physiol       Date:  2009-12-16       Impact factor: 8.340

10.  Mapping quantitative trait loci for lint yield and fiber quality across environments in a Gossypium hirsutum × Gossypium barbadense backcross inbred line population.

Authors:  Jiwen Yu; Ke Zhang; Shuaiyang Li; Shuxun Yu; Honghong Zhai; Man Wu; Xingli Li; Shuli Fan; Meizhen Song; Daigang Yang; Yunhai Li; Jinfa Zhang
Journal:  Theor Appl Genet       Date:  2012-10-12       Impact factor: 5.699
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