Literature DB >> 18055607

Network inference, analysis, and modeling in systems biology.

Réka Albert1.   

Abstract

Mesh：

Year:  2007        PMID： 18055607      PMCID： PMC2174897          DOI： 10.1105/tpc.107.054700

Source DB:  PubMed          Journal:  Plant Cell        ISSN： 1040-4651            Impact factor:   11.277


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  73 in total

1.  Integrating high-throughput and computational data elucidates bacterial networks.

Authors:  Markus W Covert; Eric M Knight; Jennifer L Reed; Markus J Herrgard; Bernhard O Palsson
Journal:  Nature       Date:  2004-05-06       Impact factor: 49.962

2.  PathBLAST: a tool for alignment of protein interaction networks.

Authors:  Brian P Kelley; Bingbing Yuan; Fran Lewitter; Roded Sharan; Brent R Stockwell; Trey Ideker
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

3.  Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction.

Authors:  Esti Yeger-Lotem; Shmuel Sattath; Nadav Kashtan; Shalev Itzkovitz; Ron Milo; Ron Y Pinter; Uri Alon; Hanah Margalit
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-12       Impact factor: 11.205

4.  Formation of regulatory patterns during signal propagation in a Mammalian cellular network.

Authors:  Avi Ma'ayan; Sherry L Jenkins; Susana Neves; Anthony Hasseldine; Elizabeth Grace; Benjamin Dubin-Thaler; Narat J Eungdamrong; Gehzi Weng; Prahlad T Ram; J Jeremy Rice; Aaron Kershenbaum; Gustavo A Stolovitzky; Robert D Blitzer; Ravi Iyengar
Journal:  Science       Date:  2005-08-12       Impact factor: 47.728

5.  The war of the whorls: genetic interactions controlling flower development.

Authors:  E S Coen; E M Meyerowitz
Journal:  Nature       Date:  1991-09-05       Impact factor: 49.962

6.  A connectionist model of development.

Authors:  E Mjolsness; D H Sharp; J Reinitz
Journal:  J Theor Biol       Date:  1991-10-21       Impact factor: 2.691

7.  Large-scale temporal gene expression mapping of central nervous system development.

Authors:  X Wen; S Fuhrman; G S Michaels; D B Carr; S Smith; J L Barker; R Somogyi
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-06       Impact factor: 11.205

8.  The logical analysis of continuous, non-linear biochemical control networks.

Authors:  L Glass; S A Kauffman
Journal:  J Theor Biol       Date:  1973-04       Impact factor: 2.691

9.  Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis.

Authors:  L Mendoza; E R Alvarez-Buylla
Journal:  J Theor Biol       Date:  1998-07-27       Impact factor: 2.691

10.  A dynamic mathematical model to clarify signaling circuitry underlying programmed cell death control in Arabidopsis disease resistance.

Authors:  Vikas Agrawal; Chu Zhang; Allan D Shapiro; Prasad S Dhurjati
Journal:  Biotechnol Prog       Date:  2004 Mar-Apr
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  56 in total

Review 1.  Methods for biological data integration: perspectives and challenges.

Authors:  Vladimir Gligorijević; Nataša Pržulj
Journal:  J R Soc Interface       Date:  2015-11-06       Impact factor: 4.118

Review 2.  Network-based approaches in drug discovery and early development.

Authors:  J M Harrold; M Ramanathan; D E Mager
Journal:  Clin Pharmacol Ther       Date:  2013-09-11       Impact factor: 6.875

Review 3.  Network integration and graph analysis in mammalian molecular systems biology.

Authors:  A Ma'ayan
Journal:  IET Syst Biol       Date:  2008-09       Impact factor: 1.615

4.  Systems biology of organ initiation at the shoot apex.

Authors:  Jan Traas; Françoise Monéger
Journal:  Plant Physiol       Date:  2009-12-09       Impact factor: 8.340

5.  Systems biology update: cell type-specific transcriptional regulatory networks.

Authors:  Li Pu; Siobhan Brady
Journal:  Plant Physiol       Date:  2009-12-04       Impact factor: 8.340

6.  OWL-NETS: Transforming OWL Representations for Improved Network Inference.

Authors:  Tiffany J Callahan; William A Baumgartner; Michael Bada; Adrianne L Stefanski; Ignacio Tripodi; Elizabeth K White; Lawrence E Hunter
Journal:  Pac Symp Biocomput       Date:  2018

7.  Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis.

Authors:  Chuang Ma; Mingming Xin; Kenneth A Feldmann; Xiangfeng Wang
Journal:  Plant Cell       Date:  2014-02-11       Impact factor: 11.277

8.  VitisNet: "Omics" integration through grapevine molecular networks.

Authors:  Jérôme Grimplet; Grant R Cramer; Julie A Dickerson; Kathy Mathiason; John Van Hemert; Anne Y Fennell
Journal:  PLoS One       Date:  2009-12-21       Impact factor: 3.240

Review 9.  Regulation by transcription factors in bacteria: beyond description.

Authors:  Enrique Balleza; Lucia N López-Bojorquez; Agustino Martínez-Antonio; Osbaldo Resendis-Antonio; Irma Lozada-Chávez; Yalbi I Balderas-Martínez; Sergio Encarnación; Julio Collado-Vides
Journal:  FEMS Microbiol Rev       Date:  2009-01       Impact factor: 16.408

10.  Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies.

Authors:  Andreas Dräger; Marcel Kronfeld; Michael J Ziller; Jochen Supper; Hannes Planatscher; Jørgen B Magnus; Marco Oldiges; Oliver Kohlbacher; Andreas Zell
Journal:  BMC Syst Biol       Date:  2009-01-14
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