Literature DB >> 18050427

Alternative splicing in C. elegans.

Alan M Zahler1.   

Abstract

Alternative splicing is a common mechanism for the generation of multiple isoforms of proteins. It can function to expand the proteome of an organism and can serve as a way to turn off gene expression post-transcriptionally. This review focuses on splicing and its regulation in C. elegans. The fully-sequenced C. elegans genome combined with its elegant genetics offers unique advantages for exploring alternative splicing regulation in metazoans. The topics covered in this review include constitutive splicing factors, identification of alternatively spliced genes, examples of alternative splicing in C. elegans, and alternative splicing regulation. Key genes whose regulated alternative splicing are reviewed include let-2, unc-32, unc-52, egl-15 and xol-1. Factors involved in alternative splicing that are discussed include mec-8, smu-1, smu-2, fox-1, exc-7 and unc-75.

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Year:  2005        PMID: 18050427      PMCID: PMC4781185          DOI: 10.1895/wormbook.1.31.1

Source DB:  PubMed          Journal:  WormBook        ISSN: 1551-8507


  17 in total

1.  In vivo effects on intron retention and exon skipping by the U2AF large subunit and SF1/BBP in the nematode Caenorhabditis elegans.

Authors:  Long Ma; Zhiping Tan; Yanling Teng; Sebastian Hoersch; H Robert Horvitz
Journal:  RNA       Date:  2011-10-27       Impact factor: 4.942

2.  Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing.

Authors:  Kourosh Salehi-Ashtiani; Xinping Yang; Adnan Derti; Weidong Tian; Tong Hao; Chenwei Lin; Kathryn Makowski; Lei Shen; Ryan R Murray; David Szeto; Nadeem Tusneem; Douglas R Smith; Michael E Cusick; David E Hill; Frederick P Roth; Marc Vidal
Journal:  Nat Methods       Date:  2008-06-15       Impact factor: 28.547

3.  Heat shock activates splicing at latent alternative 5' splice sites in nematodes.

Authors:  Yuval Nevo; Joseph Sperling; Ruth Sperling
Journal:  Nucleus       Date:  2015-01-29       Impact factor: 4.197

4.  Effect of life history on microRNA expression during C. elegans development.

Authors:  Xantha Karp; Molly Hammell; Maria C Ow; Victor Ambros
Journal:  RNA       Date:  2011-02-22       Impact factor: 4.942

5.  Genome-wide analysis of alternative splicing in Caenorhabditis elegans.

Authors:  Arun K Ramani; John A Calarco; Qun Pan; Sepand Mavandadi; Ying Wang; Andrew C Nelson; Leo J Lee; Quaid Morris; Benjamin J Blencowe; Mei Zhen; Andrew G Fraser
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

6.  Splicing reporter mice revealed the evolutionally conserved switching mechanism of tissue-specific alternative exon selection.

Authors:  Akihide Takeuchi; Motoyasu Hosokawa; Takayuki Nojima; Masatoshi Hagiwara
Journal:  PLoS One       Date:  2010-06-03       Impact factor: 3.240

7.  Caenorhabditis elegans operons contain a higher proportion of genes with multiple transcripts and use 3' splice sites differentially.

Authors:  Fei Wang; Shi Huang; Long Ma
Journal:  PLoS One       Date:  2010-08-27       Impact factor: 3.240

8.  A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types.

Authors:  Adam D Norris; Shangbang Gao; Megan L Norris; Debashish Ray; Arun K Ramani; Andrew G Fraser; Quaid Morris; Timothy R Hughes; Mei Zhen; John A Calarco
Journal:  Mol Cell       Date:  2014-06-05       Impact factor: 17.970

9.  Mutations in the Caenorhabditis elegans U2AF large subunit UAF-1 alter the choice of a 3' splice site in vivo.

Authors:  Long Ma; H Robert Horvitz
Journal:  PLoS Genet       Date:  2009-11-06       Impact factor: 5.917

10.  The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution.

Authors:  Nurit Gal-Mark; Schraga Schwartz; Oren Ram; Eduardo Eyras; Gil Ast
Journal:  PLoS Genet       Date:  2009-11-13       Impact factor: 5.917

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