Literature DB >> 18048729

Rhodanobacter ginsengisoli sp. nov. and Rhodanobacter terrae sp. nov., isolated from soil cultivated with Korean ginseng.

Hang-Yeon Weon1, Byung-Yong Kim, Seung-Beom Hong, Young-Ah Jeon, Soon-Wo Kwon, Seung-Joo Go, Bon-Sung Koo.   

Abstract

Two bacterial isolates from ginseng fields in Korea, strains GR17-7(T) and GP18-1(T), were characterized using a polyphasic approach. Phylogenetic analysis of their 16S rRNA gene sequences revealed a clear affiliation with the Gammaproteobacteria, and showed that the closest phylogenetic relationships were with members of the genus Rhodanobacter. The 16S rRNA gene sequence similarity between strains GR17-7(T) and GP18-1(T) was 97.2 %. Both strains showed 16S rRNA gene sequence similarities of 95.2-96.9 % to type strains of recognized Rhodanobacter species. The G+C contents of the DNA of strains GR17-7(T) and GP18-1(T) were 61.0 and 62.5 mol%, respectively. According to the DNA-DNA hydridization tests, the hybridization value between strains GR17-7(T) and GP18-1(T) was 34 %. Strains GR17-7(T) and GP18-1(T) showed less than 32 % DNA-DNA relatedness with Rhodanobacter fulvus KCTC 12098(T) and Rhodanobacter spathiphylli LMG 23181(T). Strains GR17-7(T) and GP18-1(T) were aerobic, Gram-negative, rod-shaped, and catalase- and oxidase-positive. Major fatty acids of both strains were iso-C(17 : 1)omega9c and iso-C(16 : 0). Based on the data presented, two novel Rhodanobacter species are proposed, with the names Rhodanobacter ginsengisoli sp. nov. (type strain GR17-7(T)=KACC 11762(T)=DSM 18993(T)) and Rhodanobacter terrae sp. nov. (type strain GP18-1(T)=KACC 11761(T)=DSM 19241(T)).

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Year:  2007        PMID: 18048729     DOI: 10.1099/ijs.0.65018-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  8 in total

1.  Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site.

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Journal:  Appl Environ Microbiol       Date:  2011-12-16       Impact factor: 4.792

2.  Denitrifying bacteria isolated from terrestrial subsurface sediments exposed to mixed-waste contamination.

Authors:  Stefan J Green; Om Prakash; Thomas M Gihring; Denise M Akob; Puja Jasrotia; Philip M Jardine; David B Watson; Steven D Brown; Anthony V Palumbo; Joel E Kostka
Journal:  Appl Environ Microbiol       Date:  2010-03-19       Impact factor: 4.792

3.  Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities.

Authors:  Joel E Kostka; Stefan J Green; Lavanya Rishishwar; Om Prakash; Lee S Katz; Leonardo Mariño-Ramírez; I King Jordan; Christine Munk; Natalia Ivanova; Natalia Mikhailova; David B Watson; Steven D Brown; Anthony V Palumbo; Scott C Brooks
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

4.  Rhodanobacter umsongensis sp. nov., isolated from a Korean ginseng field.

Authors:  Yi-Seul Kim; Soo-Jin Kim; Rangasamy Anandham; Hang-Yeon Weon; Soon-Wo Kwon
Journal:  J Microbiol       Date:  2013-04-27       Impact factor: 3.422

5.  Rhodanobacter xiangquanii sp. nov., a novel anilofos-degrading bacterium isolated from a wastewater treating system.

Authors:  Jun Zhang; Jin-Wei Zheng; Bao-Jian Hang; Ying-Ying Ni; Jian He; Shun-Peng Li
Journal:  Curr Microbiol       Date:  2010-10-10       Impact factor: 2.188

6.  Phylogenetic evidence of noteworthy microflora from the subsurface of the former Homestake gold mine, Lead, South Dakota.

Authors:  E J Waddell; T J Elliott; J M Vahrenkamp; W M Roggenthen; R K Sani; C M Anderson; S S Bang
Journal:  Environ Technol       Date:  2010 Jul-Aug       Impact factor: 3.247

7.  Independent Shifts of Abundant and Rare Bacterial Populations across East Antarctica Glacial Foreland.

Authors:  Wenkai Yan; Hongmei Ma; Guitao Shi; Yuansheng Li; Bo Sun; Xiang Xiao; Yu Zhang
Journal:  Front Microbiol       Date:  2017-08-10       Impact factor: 5.640

8.  The comprehensive changes in soil properties are continuous cropping obstacles associated with American ginseng (Panax quinquefolius) cultivation.

Authors:  Chongwei Li; Guozhong Chen; Jianlong Zhang; Ping Zhu; Xinfu Bai; Yuping Hou; Xingxiao Zhang
Journal:  Sci Rep       Date:  2021-03-03       Impact factor: 4.379

  8 in total

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