Literature DB >> 18048194

The (my)Grid ontology: bioinformatics service discovery.

K Wolstencroft1, P Alper, D Hull, C Wroe, P W Lord, R D Stevens, C A Goble.   

Abstract

(my)Grid supports in silico experiments in the life sciences, enabling the design and enactment of workflows as well as providing components to assist service discovery, data and metadata management. The (my)Grid ontology is one component in a larger semantic discovery framework for the identification of the highly distributed and heterogeneous bioinformatics services in the public domain. From an initial model of formal OWL-DL semantics throughout, we now adopt a spectrum of expressivity and reasoning for different tasks in service annotation and discovery. Here, we discuss the development and use of the (my)Grid ontology and our experiences in semantic service discovery.

Mesh:

Year:  2007        PMID: 18048194     DOI: 10.1504/IJBRA.2007.015005

Source DB:  PubMed          Journal:  Int J Bioinform Res Appl        ISSN: 1744-5485


  11 in total

Review 1.  Accessing and integrating data and knowledge for biomedical research.

Authors:  A Burgun; O Bodenreider
Journal:  Yearb Med Inform       Date:  2008

2.  BioCatalogue: a universal catalogue of web services for the life sciences.

Authors:  Jiten Bhagat; Franck Tanoh; Eric Nzuobontane; Thomas Laurent; Jerzy Orlowski; Marco Roos; Katy Wolstencroft; Sergejs Aleksejevs; Robert Stevens; Steve Pettifer; Rodrigo Lopez; Carole A Goble
Journal:  Nucleic Acids Res       Date:  2010-05-19       Impact factor: 16.971

3.  The EMBRACE web service collection.

Authors:  Steve Pettifer; Jon Ison; Matús Kalas; Dave Thorne; Philip McDermott; Inge Jonassen; Ali Liaquat; José M Fernández; Jose M Rodriguez; David G Pisano; Christophe Blanchet; Mahmut Uludag; Peter Rice; Edita Bartaseviciute; Kristoffer Rapacki; Maarten Hekkelman; Olivier Sand; Heinz Stockinger; Andrew B Clegg; Erik Bongcam-Rudloff; Jean Salzemann; Vincent Breton; Teresa K Attwood; Graham Cameron; Gert Vriend
Journal:  Nucleic Acids Res       Date:  2010-05-12       Impact factor: 16.971

4.  Semantics-based composition of EMBOSS services.

Authors:  Anna-Lena Lamprecht; Stefan Naujokat; Tiziana Margaria; Bernhard Steffen
Journal:  J Biomed Semantics       Date:  2011-03-07

5.  Mining semantic networks of bioinformatics e-resources from the literature.

Authors:  Hammad Afzal; James Eales; Robert Stevens; Goran Nenadic
Journal:  J Biomed Semantics       Date:  2011-03-07

6.  The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.

Authors:  James Malone; Andy Brown; Allyson L Lister; Jon Ison; Duncan Hull; Helen Parkinson; Robert Stevens
Journal:  J Biomed Semantics       Date:  2014-06-02

7.  Magallanes: a web services discovery and automatic workflow composition tool.

Authors:  Javier Ríos; Johan Karlsson; Oswaldo Trelles
Journal:  BMC Bioinformatics       Date:  2009-10-15       Impact factor: 3.169

8.  Knowledge-driven enhancements for task composition in bioinformatics.

Authors:  Karen Sutherland; Kenneth McLeod; Gus Ferguson; Albert Burger
Journal:  BMC Bioinformatics       Date:  2009-10-01       Impact factor: 3.169

9.  Initial implementation of a comparative data analysis ontology.

Authors:  Francisco Prosdocimi; Brandon Chisham; Enrico Pontelli; Julie D Thompson; Arlin Stoltzfus
Journal:  Evol Bioinform Online       Date:  2009-07-03       Impact factor: 1.625

10.  EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.

Authors:  Jon Ison; Matús Kalas; Inge Jonassen; Dan Bolser; Mahmut Uludag; Hamish McWilliam; James Malone; Rodrigo Lopez; Steve Pettifer; Peter Rice
Journal:  Bioinformatics       Date:  2013-03-11       Impact factor: 6.937

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