Literature DB >> 18046508

Titration of repeat-induced point mutation (RIP) by chromosome segment duplications in Neurospora crassa.

Parmit K Singh1, Durgadas P Kasbekar.   

Abstract

Repeat-induced point mutation (RIP) is a hypermutational process that alters duplicated DNA sequences in Neurospora crassa. In previous studies, five of six large ( > 100 kb) chromosome segment duplications (Dp's) examined were shown to dominantly suppress RIP in smaller (< 5 kb) duplications. The suppressor duplications were > 270 kb, whereas the lone non-suppressor duplication was approximately 117 kb. We have now screened another 33 duplications and found 29 more suppressors and four more non-suppressors. All 22 suppressor duplications whose size could be estimated were > 270 kb, whereas two newly identified non-suppressor duplications examined were 140-154 kb. RIP was suppressed in a subset of crosses heterozygous for more than one ordinarily non-suppressor duplication. These results strengthen the hypothesis that large duplications titrate out the RIP machinery and suggest the "equivalence point" for the titration is close to 300 kb.

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Year:  2007        PMID: 18046508     DOI: 10.1007/s10709-007-9234-6

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  16 in total

1.  Repeat-induced point mutation (RIP) in crosses with wild-isolated strains of Neurospora crassa: evidence for dominant reduction of RIP.

Authors:  F K Noubissi; K McCluskey; D P Kasbekar
Journal:  Fungal Genet Biol       Date:  2000-11       Impact factor: 3.495

2.  Recurrent locus-specific mutation resulting from a cryptic ectopic insertion in Neurospora.

Authors:  David D Perkins; Michael Freitag; Virginia C Pollard; Lori A Bailey-Shrode; Eric U Selker; Daniel J Ebbole
Journal:  Genetics       Date:  2007-02       Impact factor: 4.562

3.  Occurrence of repeat induced point mutation in long segmental duplications of Neurospora.

Authors:  D D Perkins; B S Margolin; E U Selker; S D Haedo
Journal:  Genetics       Date:  1997-09       Impact factor: 4.562

4.  Mapping translocation breakpoints by orthogonal field agarose-gel electrophoresis.

Authors:  M L Smith; N L Glass
Journal:  Curr Genet       Date:  1996-02       Impact factor: 3.886

5.  Meiotic silencing by unpaired DNA.

Authors:  P K Shiu; N B Raju; D Zickler; R L Metzenberg
Journal:  Cell       Date:  2001-12-28       Impact factor: 41.582

6.  Action of repeat-induced point mutation on both strands of a duplex and on tandem duplications of various sizes in Neurospora.

Authors:  M K Watters; T A Randall; B S Margolin; E U Selker; D R Stadler
Journal:  Genetics       Date:  1999-10       Impact factor: 4.562

Review 7.  RIP: the evolutionary cost of genome defense.

Authors:  James E Galagan; Eric U Selker
Journal:  Trends Genet       Date:  2004-09       Impact factor: 11.639

8.  Genetic analysis of wild-isolated Neurospora crassa strains identified as dominant suppressors of repeat-induced point mutation.

Authors:  Ashwin Bhat; Felicite K Noubissi; Meenal Vyas; Durgadas P Kasbekar
Journal:  Genetics       Date:  2003-07       Impact factor: 4.562

9.  SAD-2 is required for meiotic silencing by unpaired DNA and perinuclear localization of SAD-1 RNA-directed RNA polymerase.

Authors:  Patrick K T Shiu; Denise Zickler; Namboori B Raju; Gwenael Ruprich-Robert; Robert L Metzenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-06       Impact factor: 11.205

10.  Meiotic silencing by unpaired DNA: properties, regulation and suppression.

Authors:  Patrick K T Shiu; Robert L Metzenberg
Journal:  Genetics       Date:  2002-08       Impact factor: 4.562

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  3 in total

1.  A factor in a wild isolated Neurospora crassa strain enables a chromosome segment duplication to suppress repeat-induced point mutation.

Authors:  Mukund Ramakrishnan; T Naga Sowjanya; Kranthi B Raj; Durgadas P Kasbekar
Journal:  J Biosci       Date:  2011-12       Impact factor: 1.826

2.  Translocations used to generate chromosome segment duplications in Neurospora can disrupt genes and create novel open reading frames.

Authors:  Parmit K Singh; Srividhya V Iyer; T Naga Sowjanya; B Kranthi Raj; Durgadas P Kasbekar
Journal:  J Biosci       Date:  2010-12       Impact factor: 1.826

3.  The Neurospora crassa Standard Oak Ridge Background Exhibits Atypically Efficient Meiotic Silencing by Unpaired DNA.

Authors:  Dev Ashish Giri; Ajith V Pankajam; Koodali T Nishant; Durgadas P Kasbekar
Journal:  G3 (Bethesda)       Date:  2019-05-07       Impact factor: 3.154

  3 in total

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