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Literature DB >> 18045524

ChIP-Seq data reveal nucleosome architecture of human promoters.

Christoph D Schmid, Philipp Bucher.

Abstract

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Year: 2007 PMID： 18045524 DOI： 10.1016/j.cell.2007.11.017

Source DB: PubMed Journal: Cell ISSN： 0092-8674 Impact factor: 41.582

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32 in total

1. PHF8 targets histone methylation and RNA polymerase II to activate transcription.

Authors: Klaus Fortschegger; Petra de Graaf; Nikolay S Outchkourov; Frederik M A van Schaik; H T Marc Timmers; Ramin Shiekhattar
Journal: Mol Cell Biol Date: 2010-04-26 Impact factor: 4.272

2. Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.

Authors: Ryan J Taft; Cas Simons; Satu Nahkuri; Harald Oey; Darren J Korbie; Timothy R Mercer; Jeff Holst; William Ritchie; Justin J-L Wong; John E J Rasko; Daniel S Rokhsar; Bernard M Degnan; John S Mattick
Journal: Nat Struct Mol Biol Date: 2010-07-11 Impact factor: 15.369

3. Processing and analyzing ChIP-seq data: from short reads to regulatory interactions.

Authors: Marion Leleu; Grégory Lefebvre; Jacques Rougemont
Journal: Brief Funct Genomics Date: 2010-09-22 Impact factor: 4.241

Review 4. Genomic location analysis by ChIP-Seq.

Authors: Artem Barski; Keji Zhao
Journal: J Cell Biochem Date: 2009-05-01 Impact factor: 4.429

5. A genome-wide survey of CD4(+) lymphocyte regulatory genetic variants identifies novel asthma genes.

Authors: Sunita Sharma; Xiaobo Zhou; Derek M Thibault; Blanca E Himes; Andy Liu; Stanley J Szefler; Robert Strunk; Mario Castro; Nadia N Hansel; Gregory B Diette; Becky M Vonakis; N Franklin Adkinson; Lydiana Avila; Manuel Soto-Quiros; Albino Barraza-Villareal; Robert F Lemanske; Julian Solway; Jerry Krishnan; Steven R White; Chris Cheadle; Alan E Berger; Jinshui Fan; Meher Preethi Boorgula; Dan Nicolae; Frank Gilliland; Kathleen Barnes; Stephanie J London; Fernando Martinez; Carole Ober; Juan C Celedón; Vincent J Carey; Scott T Weiss; Benjamin A Raby
Journal: J Allergy Clin Immunol Date: 2014-06-13 Impact factor: 10.793

ChIP-Seq data reveal nucleosome architecture of human promoters.

1. PHF8 targets histone methylation and RNA polymerase II to activate transcription.

2. Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.

3. Processing and analyzing ChIP-seq data: from short reads to regulatory interactions.

Review 4. Genomic location analysis by ChIP-Seq.

5. A genome-wide survey of CD4(+) lymphocyte regulatory genetic variants identifies novel asthma genes.

6. MER41 repeat sequences contain inducible STAT1 binding sites.

7. DREAM4: Combining genetic and dynamic information to identify biological networks and dynamical models.

8. Applications of high-throughput sequencing to chromatin structure and function in mammals.

9. Stefin B interacts with histones and cathepsin L in the nucleus.

Review 10. ChIP-seq: advantages and challenges of a maturing technology.