Literature DB >> 18045125

Computer simulation of antimicrobial peptides.

Edit Mátyus1, Christian Kandt, D Peter Tieleman.   

Abstract

Naturally occurring and synthetic peptides may be a novel class of clinically useful antibiotics. A large body of experimental data on structure function relationships for such peptides is available, but the molecular mechanism of their action remains elusive in most cases. Computer simulations can give detailed insights into the interactions between peptides and lipid bilayers, at least one crucial step in the antimicrobial mechanism. Here we review recent simulations of antimicrobial peptides and discuss potential future contributions of computer simulations in understanding and ultimately designing antimicrobial peptides.

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Year:  2007        PMID: 18045125     DOI: 10.2174/092986707782360105

Source DB:  PubMed          Journal:  Curr Med Chem        ISSN: 0929-8673            Impact factor:   4.530


  22 in total

Review 1.  Designing antimicrobial peptides: form follows function.

Authors:  Christopher D Fjell; Jan A Hiss; Robert E W Hancock; Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2011-12-16       Impact factor: 84.694

Review 2.  Computational studies of peptide-induced membrane pore formation.

Authors:  Richard Lipkin; Themis Lazaridis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-08-05       Impact factor: 6.237

Review 3.  On the physiology and pathophysiology of antimicrobial peptides.

Authors:  Roland Pálffy; Roman Gardlík; Michal Behuliak; Ludevit Kadasi; Jan Turna; Peter Celec
Journal:  Mol Med       Date:  2008-11-10       Impact factor: 6.354

4.  Characterization of a potent antimicrobial lipopeptide via coarse-grained molecular dynamics.

Authors:  Joshua N Horn; Jesse D Sengillo; Dejun Lin; Tod D Romo; Alan Grossfield
Journal:  Biochim Biophys Acta       Date:  2011-07-28

Review 5.  Fluorescence spectroscopy and molecular dynamics simulations in studies on the mechanism of membrane destabilization by antimicrobial peptides.

Authors:  Gianfranco Bocchinfuso; Sara Bobone; Claudia Mazzuca; Antonio Palleschi; Lorenzo Stella
Journal:  Cell Mol Life Sci       Date:  2011-05-17       Impact factor: 9.261

6.  Thermodynamics of antimicrobial lipopeptide binding to membranes: origins of affinity and selectivity.

Authors:  Dejun Lin; Alan Grossfield
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

7.  Comparative molecular dynamics simulations of the antimicrobial peptide CM15 in model lipid bilayers.

Authors:  Yi Wang; Diana E Schlamadinger; Judy E Kim; J Andrew McCammon
Journal:  Biochim Biophys Acta       Date:  2012-02-23

8.  The molecular basis for antimicrobial activity of pore-forming cyclic peptides.

Authors:  Anna D Cirac; Gemma Moiset; Jacek T Mika; Armagan Koçer; Pedro Salvador; Bert Poolman; Siewert J Marrink; Durba Sengupta
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

9.  Analysis of the flexibility and stability of the structure of magainin in a bilayer, and in aqueous and nonaqueous solutions using molecular dynamics simulations.

Authors:  Elham Esmaili; Mohsen Shahlaei
Journal:  J Mol Model       Date:  2015-03-08       Impact factor: 1.810

10.  Interactions between fengycin and model bilayers quantified by coarse-grained molecular dynamics.

Authors:  Joshua N Horn; Aaron Cravens; Alan Grossfield
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

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