Literature DB >> 18039531

Applying genomics to organ transplantation medicine in both discovery and validation of biomarkers.

Sunil Kurian1, Yevgeniy Grigoryev, Steve Head, Daniel Campbell, Tony Mondala, Daniel R Salomon.   

Abstract

The field of biomarker discovery made a significant leap over the past few decades. As we enter the Era of the Human Genome, thousands of biomarkers can be identified in a relatively high-throughput fashion. While such magnitude and diversity of biomarkers can be seen as a challenge by itself, the field is being moved forward by new advances in bioinformatics and Systems Biology. Because of the life and death nature of end stage organ failure that transplantation treats, the severe donor organ shortage, and the powerful and toxic drug therapies required for the lifetimes of transplant patients, we envision a future for biomarkers as tools to diagnose disease in its early stages, predict prognosis, suggest treatment options and then assist in the implementation of therapies. By harnessing the power of multiple technologies in parallel makes it possible to discover and then validate the next generation of biomarkers for transplantation. We see the road ahead diverge into two paths: one from biomarkers to diagnosis and therapy and the other to a new level of insight into the complex molecular networks that determine when a healthy state becomes diseased and dysfunctional.

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Year:  2007        PMID: 18039531      PMCID: PMC2215739          DOI: 10.1016/j.intimp.2007.07.017

Source DB:  PubMed          Journal:  Int Immunopharmacol        ISSN: 1567-5769            Impact factor:   4.932


  79 in total

Review 1.  Biomarkers and surrogate endpoints: preferred definitions and conceptual framework.

Authors: 
Journal:  Clin Pharmacol Ther       Date:  2001-03       Impact factor: 6.875

2.  Gene microarrays reveal extensive differential gene expression in both CD4(+) and CD8(+) type 1 and type 2 T cells.

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Journal:  J Immunol       Date:  2001-09-15       Impact factor: 5.422

Review 3.  Regulatory T cells and organ transplantation.

Authors:  Herman Waldmann; Luis Graca; Stephen Cobbold; Elizabeth Adams; Masahide Tone; Yuki Tone
Journal:  Semin Immunol       Date:  2004-04       Impact factor: 11.130

4.  Messenger RNA for FOXP3 in the urine of renal-allograft recipients.

Authors:  Thangamani Muthukumar; Darshana Dadhania; Ruchuang Ding; Catherine Snopkowski; Rubina Naqvi; Jun B Lee; Choli Hartono; Baogui Li; Vijay K Sharma; Surya V Seshan; Sandip Kapur; Wayne W Hancock; Joseph E Schwartz; Manikkam Suthanthiran
Journal:  N Engl J Med       Date:  2005-12-01       Impact factor: 91.245

5.  Methodological challenges of genomic research--the CARGO study.

Authors:  M C Deng; H J Eisen; M R Mehra
Journal:  Am J Transplant       Date:  2006-05       Impact factor: 8.086

6.  Quantitative detection of immune activation transcripts as a diagnostic tool in kidney transplantation.

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Journal:  Proc Natl Acad Sci U S A       Date:  1997-01-21       Impact factor: 11.205

7.  Cardiac-specific troponin I levels to predict the risk of mortality in patients with acute coronary syndromes.

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Journal:  N Engl J Med       Date:  1996-10-31       Impact factor: 91.245

8.  Pathological and clinical correlates of FOXP3+ cells in renal allografts during acute rejection.

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Journal:  Am J Transplant       Date:  2007-02-07       Impact factor: 8.086

9.  Urinary aflatoxin biomarkers and risk of hepatocellular carcinoma.

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10.  p53 protein accumulation and gene mutations in multifocal esophageal precancerous lesions from symptom free subjects in a high incidence area for esophageal carcinoma in Henan, China.

Authors:  L D Wang; Q Zhou; J Y Hong; S L Qiu; C S Yang
Journal:  Cancer       Date:  1996-04-01       Impact factor: 6.860

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  12 in total

1.  Molecular pathways differentiate hepatitis C virus (HCV) recurrence from acute cellular rejection in HCV liver recipients.

Authors:  Ricardo Gehrau; Daniel Maluf; Kellie Archer; Richard Stravitz; Jihee Suh; Ngoc Le; Valeria Mas
Journal:  Mol Med       Date:  2011-04-20       Impact factor: 6.354

2.  DNA sequencing by microchip electrophoresis using mixtures of high- and low-molar mass poly(N,N-dimethylacrylamide) matrices.

Authors:  Daniel G Hert; Christopher P Fredlake; Annelise E Barron
Journal:  Electrophoresis       Date:  2008-12       Impact factor: 3.535

Review 3.  Salivary biomarkers: toward future clinical and diagnostic utilities.

Authors:  Janice M Yoshizawa; Christopher A Schafer; Jason J Schafer; James J Farrell; Bruce J Paster; David T W Wong
Journal:  Clin Microbiol Rev       Date:  2013-10       Impact factor: 26.132

Review 4.  A 'biomarker signature' for tolerance in transplantation.

Authors:  Maria P Hernandez-Fuentes; Robert I Lechler
Journal:  Nat Rev Nephrol       Date:  2010-08-17       Impact factor: 28.314

5.  Current Scientific Research Trends on Salivary Biomarkers: A Bibliometric Analysis.

Authors:  Beenish Fatima Alam; Talha Nayab; Saqib Ali; Rasha AlSheikh; Asim Mustafa Khan; Muntasar T Al Hinai; Imran Farooq
Journal:  Diagnostics (Basel)       Date:  2022-05-08

6.  Biomarkers for early and late stage chronic allograft nephropathy by proteogenomic profiling of peripheral blood.

Authors:  Sunil M Kurian; Raymond Heilman; Tony S Mondala; Aleksey Nakorchevsky; Johannes A Hewel; Daniel Campbell; Elizabeth H Robison; Lin Wang; Wen Lin; Lillian Gaber; Kim Solez; Hamid Shidban; Robert Mendez; Randolph L Schaffer; Jonathan S Fisher; Stuart M Flechner; Steve R Head; Steve Horvath; John R Yates; Christopher L Marsh; Daniel R Salomon
Journal:  PLoS One       Date:  2009-07-10       Impact factor: 3.240

7.  Proteomic signatures in plasma during early acute renal allograft rejection.

Authors:  Gabriela V Cohen Freue; Mayu Sasaki; Anna Meredith; Oliver P Günther; Axel Bergman; Mandeep Takhar; Alice Mui; Robert F Balshaw; Raymond T Ng; Nina Opushneva; Zsuzsanna Hollander; Guiyun Li; Christoph H Borchers; Janet Wilson-McManus; Bruce M McManus; Paul A Keown; W Robert McMaster
Journal:  Mol Cell Proteomics       Date:  2010-05-25       Impact factor: 5.911

8.  Gene expression profiling in organ transplantation.

Authors:  Osama Ashry Ahmed Gheith
Journal:  Int J Nephrol       Date:  2011-08-09

9.  The Role of MicroRNAs in Human Diseases.

Authors:  Ali M Ardekani; Mozhgan Moslemi Naeini
Journal:  Avicenna J Med Biotechnol       Date:  2010-10

10.  Biomarkers of disease differentiation: HCV recurrence versus acute cellular rejection.

Authors:  Ricardo Gehrau; Valeria Mas; Kellie Archer; Daniel Maluf
Journal:  Fibrogenesis Tissue Repair       Date:  2012-06-06
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