Literature DB >> 18031291

The role of OXA-1 beta-lactamase Asp(66) in the stabilization of the active-site carbamate group and in substrate turnover.

David A Leonard1, Andrea M Hujer, Brian A Smith, Kyle D Schneider, Christopher R Bethel, Kristine M Hujer, Robert A Bonomo.   

Abstract

The OXA-1 beta-lactamase is one of the few class D enzymes that has an aspartate residue at position 66, a position that is proximal to the active-site residue Ser(67). In class A beta-lactamases, such as TEM-1 and SHV-1, residues adjacent to the active-site serine residue play a crucial role in inhibitor resistance and substrate selectivity. To probe the role of Asp(66) in substrate affinity and catalysis, we performed site-saturation mutagenesis at this position. Ampicillin MIC (minimum inhibitory concentration) values for the full set of Asp(66) mutants expressed in Escherichia coli DH10B ranged from < or =8 microg/ml for cysteine, proline and the basic amino acids to > or =256 microg/ml for asparagine, leucine and the wild-type aspartate. Replacement of aspartic acid by asparagine at position 66 also led to a moderate enhancement of extended-spectrum cephalosporin resistance. OXA-1 shares with other class D enzymes a carboxylated residue, Lys(70), that acts as a general base in the catalytic mechanism. The addition of 25 mM bicarbonate to Luria-Bertani-broth agar resulted in a > or =16-fold increase in MICs for most OXA-1 variants with amino acid replacements at position 66 when expressed in E. coli. Because Asp(66) forms hydrogen bonds with several other residues in the OXA-1 active site, we propose that this residue plays a role in stabilizing the CO2 bound to Lys(70) and thereby profoundly affects substrate turnover.

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Year:  2008        PMID: 18031291     DOI: 10.1042/BJ20070573

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  16 in total

1.  Strategic Approaches to Overcome Resistance against Gram-Negative Pathogens Using β-Lactamase Inhibitors and β-Lactam Enhancers: Activity of Three Novel Diazabicyclooctanes WCK 5153, Zidebactam (WCK 5107), and WCK 4234.

Authors:  Krisztina M Papp-Wallace; Nhu Q Nguyen; Michael R Jacobs; Christopher R Bethel; Melissa D Barnes; Vijay Kumar; Saralee Bajaksouzian; Susan D Rudin; Philip N Rather; Satish Bhavsar; Tadiparthi Ravikumar; Prasad K Deshpande; Vijay Patil; Ravindra Yeole; Sachin S Bhagwat; Mahesh V Patel; Focco van den Akker; Robert A Bonomo
Journal:  J Med Chem       Date:  2018-04-20       Impact factor: 7.446

Review 2.  Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for the Rapid Detection of Antimicrobial Resistance Mechanisms and Beyond.

Authors:  Marina Oviaño; Germán Bou
Journal:  Clin Microbiol Rev       Date:  2018-11-28       Impact factor: 26.132

3.  Site-saturation mutagenesis of position V117 in OXA-1 β-lactamase: effect of side chain polarity on enzyme carboxylation and substrate turnover.

Authors:  Jennifer S Buchman; Kyle D Schneider; Aaron R Lloyd; Stephanie L Pavlish; David A Leonard
Journal:  Biochemistry       Date:  2012-03-28       Impact factor: 3.162

4.  The different inhibition mechanisms of OXA-1 and OXA-24 β-lactamases are determined by the stability of active site carboxylated lysine.

Authors:  Tao Che; Christopher R Bethel; Marianne Pusztai-Carey; Robert A Bonomo; Paul R Carey
Journal:  J Biol Chem       Date:  2014-01-17       Impact factor: 5.157

Review 5.  Class D β-lactamases: a reappraisal after five decades.

Authors:  David A Leonard; Robert A Bonomo; Rachel A Powers
Journal:  Acc Chem Res       Date:  2013-07-31       Impact factor: 22.384

6.  Structures of the class D carbapenemase OXA-24 from Acinetobacter baumannii in complex with doripenem.

Authors:  Kyle D Schneider; Caleb J Ortega; Nicholas A Renck; Robert A Bonomo; Rachel A Powers; David A Leonard
Journal:  J Mol Biol       Date:  2011-01-06       Impact factor: 5.469

7.  Enhancing resistance to cephalosporins in class C beta-lactamases: impact of Gly214Glu in CMY-2.

Authors:  Andrea Endimiani; Yohei Doi; Christopher R Bethel; Magdalena Taracila; Jennifer M Adams-Haduch; Alexandra O'Keefe; Andrea M Hujer; David L Paterson; Marion J Skalweit; Malcolm G P Page; Sarah M Drawz; Robert A Bonomo
Journal:  Biochemistry       Date:  2010-02-09       Impact factor: 3.162

8.  A fluorescent carbapenem for structure function studies of penicillin-binding proteins, β-lactamases, and β-lactam sensors.

Authors:  Cynthia M June; Robert M Vaughan; Lucas S Ulberg; Robert A Bonomo; Laurie A Witucki; David A Leonard
Journal:  Anal Biochem       Date:  2014-07-21       Impact factor: 3.365

9.  Mutation of the active site carboxy-lysine (K70) of OXA-1 beta-lactamase results in a deacylation-deficient enzyme.

Authors:  Kyle D Schneider; Christopher R Bethel; Anne M Distler; Andrea M Hujer; Robert A Bonomo; David A Leonard
Journal:  Biochemistry       Date:  2009-07-07       Impact factor: 3.162

10.  The 1.4 A crystal structure of the class D beta-lactamase OXA-1 complexed with doripenem.

Authors:  Kyle D Schneider; Mary E Karpen; Robert A Bonomo; David A Leonard; Rachel A Powers
Journal:  Biochemistry       Date:  2009-12-22       Impact factor: 3.162

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