Literature DB >> 18023116

C. elegans noncoding RNA genes.

Shawn L Stricklin1, Sam Griffiths-Jones, Sean R Eddy.   

Abstract

The C. elegans genome contains approximately 1300 genes that produce functional noncoding RNA (ncRNA) transcripts. Here we describe what is currently known about these ncRNA genes, from the perspective of the annotation of the finished genome sequence. We have collated a reference set of C. elegans ncRNA gene annotation relative to the WS130 version of the genome assembly, and made these data available in several formats.

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Year:  2005        PMID： 18023116      PMCID： PMC4781554          DOI： 10.1895/wormbook.1.1.1

Source DB:  PubMed          Journal:  WormBook        ISSN： 1551-8507


  19 in total

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2.  The tedious task of finding homologous noncoding RNA genes.

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4.  Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.

Authors:  Housheng He; Jie Wang; Tao Liu; X Shirley Liu; Tiantian Li; Yunfei Wang; Zuwei Qian; Haixia Zheng; Xiaopeng Zhu; Tao Wu; Baochen Shi; Wei Deng; Wei Zhou; Geir Skogerbø; Runsheng Chen
Journal:  Genome Res       Date:  2007-09-04       Impact factor: 9.043

5.  Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes.

Authors:  Seolkyoung Jung; Estienne C Swart; Patrick J Minx; Vincent Magrini; Elaine R Mardis; Laura F Landweber; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2011-06-28       Impact factor: 16.971

6.  The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression.

Authors:  Yunfei Wang; Jingjing Chen; Guifeng Wei; Housheng He; Xiaopeng Zhu; Tengfei Xiao; Jiao Yuan; Bo Dong; Shunmin He; Geir Skogerbø; Runsheng Chen
Journal:  Nucleic Acids Res       Date:  2011-03-04       Impact factor: 16.971

7.  Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray.

Authors:  Housheng He; Lun Cai; Geir Skogerbø; Wei Deng; Tao Liu; Xiaopeng Zhu; Yudong Wang; Dong Jia; Zhihua Zhang; Yong Tao; Haipan Zeng; Muhammad Nauman Aftab; Yan Cui; Guozhen Liu; Runsheng Chen
Journal:  Nucleic Acids Res       Date:  2006-05-31       Impact factor: 16.971

8.  Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development.

Authors:  Masaomi Kato; Alexandre de Lencastre; Zachary Pincus; Frank J Slack
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9.  Evolutionary conservation and functional roles of ncRNA.

Authors:  Zhipeng Qu; David L Adelson
Journal:  Front Genet       Date:  2012-10-09       Impact factor: 4.599

Review 10.  The nucleolus of Caenorhabditis elegans.

Authors:  Li-Wei Lee; Chi-Chang Lee; Chi-Ruei Huang; Szecheng J Lo
Journal:  J Biomed Biotechnol       Date:  2012-04-19
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