Literature DB >> 18019525

Fast electron density methods in the life sciences--a routine application in the future?

Peter Luger1.   

Abstract

The understanding of mutual recognition of biologically interacting systems on an atomic scale is of paramount importance in the life sciences. Electron density distributions that can be obtained from a high resolution X-ray diffraction experiment can provide--in addition to steric information--electronic properties of the species involved in these interactions. In recent years experimental ED methods have seen several favourable developments towards successful application in the life sciences. Experimental and methodological advances have made possible on the one hand high-speed X-ray diffraction experiments, and have allowed on the other hand the quantitative derivation of bonding, non-bonding and atomic electronic properties. This has made the investigation of a large number of molecules possible, and moreover, molecules with 200 or more atoms can be subject of experimental ED studies, as has been demonstrated by the example of vitamin B12. Supported by the experimentally verified transferability concept of submolecular electronic properties, a key issue in Bader's The Quantum Theory of Atoms in Molecules, activities have emerged to establish databases for the additive generation of electron densities of macromolecules from submolecular building blocks. It follows that the major aims of any experimental electron density work in the life sciences, namely the generation of electronic information for a series of molecules in a reasonable time and the study of biological macromolecules (proteins, polynucleotides), are within reach in the near future.

Entities:  

Year:  2007        PMID: 18019525     DOI: 10.1039/b706235d

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  6 in total

Review 1.  Tools used to study how protein complexes are assembled in signaling cascades.

Authors:  Susan Dwane; Patrick A Kiely
Journal:  Bioeng Bugs       Date:  2011-09-01

2.  Combined quantum mechanics/molecular mechanics (QM/MM) methods to understand the charge density distribution of estrogens in the active site of estrogen receptors.

Authors:  C Kalaiarasi; S Manjula; P Kumaradhas
Journal:  RSC Adv       Date:  2019-12-10       Impact factor: 4.036

3.  Modeling biophysical and biological properties from the characteristics of the molecular electron density, electron localization and delocalization matrices, and the electrostatic potential.

Authors:  Chérif F Matta
Journal:  J Comput Chem       Date:  2014-04-29       Impact factor: 3.376

Review 4.  Contemporary X-ray electron-density studies using synchrotron radiation.

Authors:  Mads R V Jørgensen; Venkatesha R Hathwar; Niels Bindzus; Nanna Wahlberg; Yu-Sheng Chen; Jacob Overgaard; Bo B Iversen
Journal:  IUCrJ       Date:  2014-08-29       Impact factor: 4.769

5.  Insight into trifluoromethylation - experimental electron density for Togni reagent I.

Authors:  R Wang; I Kalf; U Englert
Journal:  RSC Adv       Date:  2018-10-05       Impact factor: 3.361

Review 6.  Contributions of charge-density research to medicinal chemistry.

Authors:  Birger Dittrich; Chérif F Matta
Journal:  IUCrJ       Date:  2014-09-23       Impact factor: 4.769

  6 in total

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