Literature DB >> 18008376

Systems biology of transcription control in macrophages.

Timothy Ravasi1, Christine A Wells, David A Hume.   

Abstract

The study of the mammalian immune system offers many advantages to systems biologists. The cellular components of the mammalian immune system are experimentally tractable; they can be isolated or differentiated from in vivo and ex vivo sources and have an essential role in health and disease. For these reasons, the major effectors cells of the innate immune system, macrophages, have been a particular focus in international genome and transcriptome consortia. Genome-scale analysis of the transcriptome, and transcription initiation has enabled the construction of predictive models of transcription control in macrophages that identify the points of control (the major nodes of networks) and the ways in which they interact. 2007 Wiley Periodicals, Inc

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Year:  2007        PMID: 18008376     DOI: 10.1002/bies.20683

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  11 in total

1.  TLR activation of the transcription factor XBP1 regulates innate immune responses in macrophages.

Authors:  Fabio Martinon; Xi Chen; Ann-Hwee Lee; Laurie H Glimcher
Journal:  Nat Immunol       Date:  2010-03-28       Impact factor: 25.606

Review 2.  Transcriptional control of the inflammatory response.

Authors:  Ruslan Medzhitov; Tiffany Horng
Journal:  Nat Rev Immunol       Date:  2009-10       Impact factor: 53.106

3.  Fine-tuning nucleophosmin in macrophage differentiation and activation.

Authors:  Leslie Guery; Naïma Benikhlef; Thomas Gautier; Catherine Paul; Gaetan Jego; Erick Dufour; Arnaud Jacquel; Radj Cally; Bénédicte Manoury; Tom Vanden Berghe; Peter Vandenabeele; Nathalie Droin; Eric Solary
Journal:  Blood       Date:  2011-08-29       Impact factor: 22.113

4.  Antiviral response dictated by choreographed cascade of transcription factors.

Authors:  Elena Zaslavsky; Uri Hershberg; Jeremy Seto; Alissa M Pham; Susanna Marquez; Jamie L Duke; James G Wetmur; Benjamin R Tenoever; Stuart C Sealfon; Steven H Kleinstein
Journal:  J Immunol       Date:  2010-02-17       Impact factor: 5.422

5.  Innate killing of Leishmania donovani by macrophages of the splenic marginal zone requires IRF-7.

Authors:  Rebecca Phillips; Mattias Svensson; Naveed Aziz; Asher Maroof; Najmeeyah Brown; Lynette Beattie; Nathalie Signoret; Paul M Kaye
Journal:  PLoS Pathog       Date:  2010-03-12       Impact factor: 6.823

6.  Network topologies and dynamics leading to endotoxin tolerance and priming in innate immune cells.

Authors:  Yan Fu; Trevor Glaros; Meng Zhu; Ping Wang; Zhanghan Wu; John J Tyson; Liwu Li; Jianhua Xing
Journal:  PLoS Comput Biol       Date:  2012-05-17       Impact factor: 4.475

Review 7.  "Of mice and men": arginine metabolism in macrophages.

Authors:  Anita C Thomas; Joshua T Mattila
Journal:  Front Immunol       Date:  2014-10-07       Impact factor: 7.561

8.  Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection.

Authors:  Elena Zaslavsky; German Nudelman; Susanna Marquez; Uri Hershberg; Boris M Hartmann; Juilee Thakar; Stuart C Sealfon; Steven H Kleinstein
Journal:  BMC Bioinformatics       Date:  2013-04-17       Impact factor: 3.169

9.  Systems approaches to computational modeling of the oral microbiome.

Authors:  Dimiter V Dimitrov; Julia Hoeng
Journal:  Front Physiol       Date:  2013-07-10       Impact factor: 4.566

10.  Analysis of the transcriptional networks underpinning the activation of murine macrophages by inflammatory mediators.

Authors:  Sobia Raza; Mark W Barnett; Zohar Barnett-Itzhaki; Ido Amit; David A Hume; Tom C Freeman
Journal:  J Leukoc Biol       Date:  2014-04-10       Impact factor: 6.011

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