Literature DB >> 18007043

Purification, crystallization and preliminary X-ray analysis of a thermostable glycoside hydrolase family 43 beta-xylosidase from Geobacillus thermoleovorans IT-08.

Ali Rohman1, Niels van Oosterwijk, Slavko Kralj, Lubbert Dijkhuizen, Bauke W Dijkstra, Ni Nyoman Tri Puspaningsih.   

Abstract

The main enzymes involved in xylan-backbone hydrolysis are endo-1,4-beta-xylanase and beta-xylosidase. beta-Xylosidase converts the xylo-oligosaccharides produced by endo-1,4-beta-xylanase into xylose monomers. The beta-xylosidase from the thermophilic Geobacillus thermoleovorans IT-08, a member of glycoside hydrolase family 43, was crystallized at room temperature using the hanging-drop vapour-diffusion method. Two crystal forms were observed. Bipyramid-shaped crystals belonging to space group P4(3)2(1)2, with unit-cell parameters a = b = 62.53, c = 277.4 A diffracted to 1.55 A resolution. The rectangular crystals belonged to space group P2(1), with unit-cell parameters a = 57.94, b = 142.1, c = 153.9 A, beta = 90.5 degrees , and diffracted to 1.80 A resolution.

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Year:  2007        PMID: 18007043      PMCID: PMC2339754          DOI: 10.1107/S1744309107046015

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  8 in total

Review 1.  Biotechnology of microbial xylanases: enzymology, molecular biology, and application.

Authors:  S Subramaniyan; P Prema
Journal:  Crit Rev Biotechnol       Date:  2002       Impact factor: 8.429

Review 2.  Microbial xylanases and their industrial applications: a review.

Authors:  Q K Beg; M Kapoor; L Mahajan; G S Hoondal
Journal:  Appl Microbiol Biotechnol       Date:  2001-08       Impact factor: 4.813

3.  The structure of an inverting GH43 beta-xylosidase from Geobacillus stearothermophilus with its substrate reveals the role of the three catalytic residues.

Authors:  Christian Brüx; Alon Ben-David; Dalia Shallom-Shezifi; Maya Leon; Karsten Niefind; Gil Shoham; Yuval Shoham; Dietmar Schomburg
Journal:  J Mol Biol       Date:  2006-03-20       Impact factor: 5.469

4.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

Review 5.  Structural and sequence-based classification of glycoside hydrolases.

Authors:  B Henrissat; G Davies
Journal:  Curr Opin Struct Biol       Date:  1997-10       Impact factor: 6.809

Review 6.  Xylanases from fungi: properties and industrial applications.

Authors:  M L T M Polizeli; A C S Rizzatti; R Monti; H F Terenzi; J A Jorge; D S Amorim
Journal:  Appl Microbiol Biotechnol       Date:  2005-01-27       Impact factor: 4.813

Review 7.  Hemicellulose bioconversion.

Authors:  Badal C Saha
Journal:  J Ind Microbiol Biotechnol       Date:  2003-04-16       Impact factor: 3.346

8.  Cellvibrio japonicus alpha-L-arabinanase 43A has a novel five-blade beta-propeller fold.

Authors:  Didier Nurizzo; Johan P Turkenburg; Simon J Charnock; Shirley M Roberts; Eleanor J Dodson; Vincent A McKie; Edward J Taylor; Harry J Gilbert; Gideon J Davies
Journal:  Nat Struct Biol       Date:  2002-09
  8 in total
  3 in total

1.  Characterization of a novel beta-xylosidase, XylC, from Thermoanaerobacterium saccharolyticum JW/SL-YS485.

Authors:  Weilan Shao; Yemin Xue; Ailian Wu; Irina Kataeva; Jianjun Pei; Huawei Wu; Juergen Wiegel
Journal:  Appl Environ Microbiol       Date:  2010-12-03       Impact factor: 4.792

2.  Biochemical and structural insights into xylan utilization by the thermophilic bacterium Caldanaerobius polysaccharolyticus.

Authors:  Yejun Han; Vinayak Agarwal; Dylan Dodd; Jason Kim; Brian Bae; Roderick I Mackie; Satish K Nair; Isaac K O Cann
Journal:  J Biol Chem       Date:  2012-08-22       Impact factor: 5.157

3.  Structural basis of product inhibition by arabinose and xylose of the thermostable GH43 β-1,4-xylosidase from Geobacillus thermoleovorans IT-08.

Authors:  Ali Rohman; Niels van Oosterwijk; Ni Nyoman Tri Puspaningsih; Bauke W Dijkstra
Journal:  PLoS One       Date:  2018-04-26       Impact factor: 3.240

  3 in total

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