Literature DB >> 18003642

MetaNetter: inference and visualization of high-resolution metabolomic networks.

Fabien Jourdan1, Rainer Breitling, Michael P Barrett, David Gilbert.   

Abstract

SUMMARY: We present a Cytoscape plugin for the inference and visualization of networks from high-resolution mass spectrometry metabolomic data. The software also provides access to basic topological analysis. This open source, multi-platform software has been successfully used to interpret metabolomic experiments and will enable others using filtered, high mass accuracy mass spectrometric data sets to build and analyse networks. AVAILABILITY: http://compbio.dcs.gla.ac.uk/fabien/abinitio/abinitio.html

Entities:  

Mesh：

Substances：

Year:  2007        PMID： 18003642     DOI： 10.1093/bioinformatics/btm536

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  19 in total

1.  Compound identification using partial and semipartial correlations for gas chromatography-mass spectrometry data.

Authors:  Seongho Kim; Imhoi Koo; Jaesik Jeong; Shiwen Wu; Xue Shi; Xiang Zhang
Journal:  Anal Chem       Date:  2012-07-26       Impact factor: 6.986

2.  Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.

Authors:  Zakhar Sergeevich Mustafin; Sergey Alexandrovich Lashin; Yury Georgievich Matushkin; Konstantin Vladimirovich Gunbin; Dmitry Arkadievich Afonnikov
Journal:  BMC Bioinformatics       Date:  2017-01-27       Impact factor: 3.169

3.  Unexpected molecular diversity of brown carbon formed by Maillard-like reactions in aqueous aerosols.

Authors:  Shanshan Tang; Feifei Li; Jitao Lv; Lei Liu; Guangming Wu; Yarui Wang; Wanchao Yu; Yawei Wang; Guibin Jiang
Journal:  Chem Sci       Date:  2022-06-30       Impact factor: 9.969

4.  Navigating natural variation in herbivory-induced secondary metabolism in coyote tobacco populations using MS/MS structural analysis.

Authors:  Dapeng Li; Ian T Baldwin; Emmanuel Gaquerel
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-13       Impact factor: 11.205

5.  Pathos: a web facility that uses metabolic maps to display experimental changes in metabolites identified by mass spectrometry.

Authors:  David P Leader; Karl Burgess; Darren Creek; Michael P Barrett
Journal:  Rapid Commun Mass Spectrom       Date:  2011-11-30       Impact factor: 2.419

6.  Path finding methods accounting for stoichiometry in metabolic networks.

Authors:  Jon Pey; Joaquín Prada; John E Beasley; Francisco J Planes
Journal:  Genome Biol       Date:  2011-05-27       Impact factor: 13.583

Review 7.  Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices.

Authors:  Saleh Alseekh; Asaph Aharoni; Yariv Brotman; Kévin Contrepois; John D'Auria; Jan Ewald; Jennifer C Ewald; Paul D Fraser; Patrick Giavalisco; Robert D Hall; Matthias Heinemann; Hannes Link; Jie Luo; Steffen Neumann; Jens Nielsen; Leonardo Perez de Souza; Kazuki Saito; Uwe Sauer; Frank C Schroeder; Stefan Schuster; Gary Siuzdak; Aleksandra Skirycz; Lloyd W Sumner; Michael P Snyder; Huiru Tang; Takayuki Tohge; Yulan Wang; Weiwei Wen; Si Wu; Guowang Xu; Nicola Zamboni; Alisdair R Fernie
Journal:  Nat Methods       Date:  2021-07-08       Impact factor: 47.990

8.  Determination of Abundant Metabolite Matrix Adducts Illuminates the Dark Metabolome of MALDI-Mass Spectrometry Imaging Datasets.

Authors:  Moritz Janda; Brandon K B Seah; Dennis Jakob; Janine Beckmann; Benedikt Geier; Manuel Liebeke
Journal:  Anal Chem       Date:  2021-06-07       Impact factor: 6.986

9.  A survey of visualization tools for biological network analysis.

Authors:  Georgios A Pavlopoulos; Anna-Lynn Wegener; Reinhard Schneider
Journal:  BioData Min       Date:  2008-11-28       Impact factor: 2.522

10.  MassTRIX: mass translator into pathways.

Authors:  Karsten Suhre; Philippe Schmitt-Kopplin
Journal:  Nucleic Acids Res       Date:  2008-04-28       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.